Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MY9_RS09260 Genome accession   NC_017743
Coordinates   1809855..1811105 (+) Length   416 a.a.
NCBI ID   WP_014664020.1    Uniprot ID   -
Organism   Bacillus sp. JS     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1804855..1816105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY9_RS09230 (MY9_1833) - 1804945..1806231 (+) 1287 WP_014664015.1 pitrilysin family protein -
  MY9_RS09235 (MY9_1834) efpI 1806286..1807014 (+) 729 WP_041521338.1 EF-P-5 aminopentanone reductase -
  MY9_RS09240 (MY9_1835) - 1807095..1807352 (+) 258 WP_003245199.1 DUF3243 domain-containing protein -
  MY9_RS09245 (MY9_1836) - 1807482..1808273 (+) 792 WP_040083145.1 YmfK family protein -
  MY9_RS09250 (MY9_1837) rodZ 1808340..1809206 (+) 867 WP_237711718.1 cell shape determination protein RodZ -
  MY9_RS09255 (MY9_1838) pgsA 1809256..1809837 (+) 582 WP_014664019.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MY9_RS09260 (MY9_1839) cinA 1809855..1811105 (+) 1251 WP_014664020.1 competence/damage-inducible protein A Machinery gene
  MY9_RS09265 (MY9_1840) recA 1811278..1812324 (+) 1047 WP_014664021.1 recombinase RecA Machinery gene
  MY9_RS09270 (MY9_1841) - 1812493..1813668 (+) 1176 WP_014664022.1 serine hydrolase domain-containing protein -
  MY9_RS09275 (MY9_1842) rny 1813945..1815507 (+) 1563 WP_003221010.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45451.84 Da        Isoelectric Point: 5.2539

>NTDB_id=50605 MY9_RS09260 WP_014664020.1 1809855..1811105(+) (cinA) [Bacillus sp. JS]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLIEHEARFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSKACKEKGITISAAESFTGGLFSEWLTDLSGASTLFAGGVVCYTNDVKQNVLG
VKKDTLDRFGAVSKECAAELAKGVQKLTGSDIGISFTGVAGPDAQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=50605 MY9_RS09260 WP_014664020.1 1809855..1811105(+) (cinA) [Bacillus sp. JS]
ATGGAATTTCCAAAAAAAGCAGAAATAATTGCAGTCGGTTCAGAGCTGCTGCTTGGCCAAATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGGGTCAACGTATTTTATCATACAGCGGTCGGAGACAATCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAACGCTCTGATTTCATTATTTTTTCAGGAGGTCTTGGACCCACAAAGGATGACCTG
ACGAAAGAAACGATTGCAAATACGCTGGGGCGTCCGCTTGTGTTAAATGATGAGGCATTCCAATCCATTGAGGACTATTT
CAAGCGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGATCTGACGTGCTGGCGAATC
ACTTTGGAATGGCCCCGGGAATGCTCATAGAGCATGAAGCGCGCTTCTATATGCTTCTTCCTGGGCCGCCGAGCGAATTG
CGTCCAATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTCAAAAAGATGGGTTCAAATGAAAAAATCGTGTCCACCGTTCT
TCGCTTTTTCGGTATCGGCGAATCTCAGCTTGAAGCCGATTTGGAAGACATTATTGATGCACAAACCAACCCGACAATCG
CTCCTTTGGCTGCTGATGGAGAGGTGACGCTGCGTCTGACAGCCAAACACGCCGATGAAAAGGAAACAGAACGTCTGCTA
AAAGAAACAGAGGCCGTTATCTTAGAGCGTGTCGGTGAATTTTTCTATGGGTACGATGATACTTCTCTTGTAAAAGAGCT
ATCTAAAGCATGTAAGGAAAAAGGCATTACAATTTCTGCGGCAGAAAGCTTTACCGGCGGGCTTTTTTCTGAATGGCTGA
CGGATCTTAGCGGTGCTTCAACATTATTTGCCGGCGGTGTTGTTTGCTATACAAACGACGTGAAGCAGAATGTGCTTGGT
GTGAAGAAGGACACATTAGATCGTTTTGGAGCGGTCAGCAAGGAATGCGCAGCCGAACTGGCTAAGGGTGTTCAAAAACT
CACTGGCAGCGATATCGGCATTAGCTTTACTGGTGTAGCAGGACCTGATGCTCAAGAAGGGCATGAGCCTGGACATGTGT
TTATCGGTATTTCCGCAAATGGGAAAGAAGAGGTTCATGAGTTTCACTTTGCGGGCTCCAGAACGGGAATCAGAAAACGC
GGCGCCAAATATGGCTGCCATTTAATCTTAAAGCTTTTAGAACAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

98.077

100

0.981
  cinA Streptococcus mitis NCTC 12261

45.694

100

0.459
  cinA Streptococcus mitis SK321

45.694

100

0.459
  cinA Streptococcus pneumoniae TIGR4

45.455

100

0.457
  cinA Streptococcus mutans UA159

45.763

99.279

0.454
  cinA Streptococcus pneumoniae Rx1

45.215

100

0.454
  cinA Streptococcus pneumoniae R6

45.215

100

0.454
  cinA Streptococcus pneumoniae D39

44.976

100

0.452
  cinA Streptococcus suis isolate S10

41.645

90.625

0.377

Multiple sequence alignment