Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I0K03_RS18125 Genome accession   NZ_CP064875
Coordinates   3618006..3619037 (-) Length   343 a.a.
NCBI ID   WP_200203279.1    Uniprot ID   -
Organism   Bacillus toyonensis strain P18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3613006..3624037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0K03_RS18105 (I0K03_18105) - 3613623..3614546 (-) 924 WP_000688028.1 dipeptidase -
  I0K03_RS18110 (I0K03_18110) spoVS 3614605..3614865 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  I0K03_RS18115 (I0K03_18115) - 3615015..3615809 (-) 795 WP_001221099.1 TIGR00282 family metallophosphoesterase -
  I0K03_RS18120 (I0K03_18120) rny 3615957..3617522 (-) 1566 WP_000204714.1 ribonuclease Y -
  I0K03_RS18125 (I0K03_18125) recA 3618006..3619037 (-) 1032 WP_200203279.1 recombinase RecA Machinery gene
  I0K03_RS18130 (I0K03_18130) cinA 3619182..3620420 (-) 1239 WP_087950641.1 competence/damage-inducible protein CinA Machinery gene
  I0K03_RS18135 (I0K03_18135) pgsA 3620441..3621019 (-) 579 WP_001052980.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I0K03_RS18140 (I0K03_18140) - 3621083..3621997 (-) 915 WP_000137455.1 helix-turn-helix domain-containing protein -
  I0K03_RS18145 (I0K03_18145) - 3622019..3622804 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  I0K03_RS18150 (I0K03_18150) - 3622943..3623191 (-) 249 WP_000114447.1 DUF3243 domain-containing protein -
  I0K03_RS18155 (I0K03_18155) ymfI 3623267..3623980 (-) 714 WP_000759614.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37372.37 Da        Isoelectric Point: 4.9057

>NTDB_id=505551 I0K03_RS18125 WP_200203279.1 3618006..3619037(-) (recA) [Bacillus toyonensis strain P18]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERRISTISSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVSLHAIAE
VQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT
KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFF
VRDHHGIGEDSGVEDMEDSTLQD

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=505551 I0K03_RS18125 WP_200203279.1 3618006..3619037(-) (recA) [Bacillus toyonensis strain P18]
ATGAGTGATCGTCAAGCGGCATTAGATATGGCGTTAAAACAAATAGAGAAGCAATTCGGTAAAGGTTCAATTATGAAATT
AGGAGAACAAGCGGAGCGTAGAATTTCTACAATTTCAAGTGGTTCTTTAGCACTTGATGTGGCACTAGGGGTAGGCGGAT
ACCCACGTGGCCGTATTATTGAAATTTACGGACCTGAAAGTTCAGGTAAAACAACAGTTTCATTACATGCAATTGCTGAA
GTACAGCGTCAAGGTGGACAAGCAGCATTTATTGATGCGGAGCATGCAATGGATCCTGTATATGCACAAAAATTAGGCGT
TAACATAGATGAATTACTATTATCACAGCCTGATACAGGGGAACAAGGACTAGAAATCGCAGAAGCACTTGTACGAAGTG
GCGCGGTTGACATTATCGTAATTGACTCTGTAGCAGCTCTTGTACCGAAAGCAGAGATCGAAGGAGACATGGGTGACTCA
CACGTAGGTTTACAAGCACGTTTAATGTCACAAGCACTTCGTAAGCTTTCAGGTGCAATCAATAAATCAAAAACAATCGC
AATCTTTATCAACCAAATTCGTGAAAAAGTTGGGGTTATGTTCGGGAACCCAGAAACAACTCCAGGTGGTCGTGCGTTGA
AATTCTATTCAACAGTTCGTCTTGAAGTACGTCGTGCTGAGCAATTAAAGCAAGGTAACGACATCGTTGGTAATAAAACG
AAAGTAAAAGTAGTGAAAAATAAAGTAGCACCACCATTCCGTGTTGCTGAAGTTGATATTATGTACGGAGAAGGTATTTC
AAGAGAAGGTGAAATCTTAGATATGGCTTCTGAACTTGATATCGTTCAAAAGAGTGGTGCTTGGTACTCGTATAATGAAG
AACGTTTAGGACAAGGTCGTGAAAATTCAAAACAATTCTTAAAAGAGAATACGGATTTAAGAGAGGAAATTGCCTTCTTT
GTTCGTGATCATCACGGAATTGGTGAAGACTCAGGTGTGGAAGACATGGAAGATTCAACTCTTCAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.486

97.085

0.84
  recA Latilactobacillus sakei subsp. sakei 23K

76.147

95.335

0.726
  recA Streptococcus pneumoniae D39

67.93

100

0.679
  recA Streptococcus pneumoniae Rx1

67.93

100

0.679
  recA Streptococcus pneumoniae R6

67.93

100

0.679
  recA Streptococcus pneumoniae TIGR4

67.93

100

0.679
  recA Streptococcus mutans UA159

67.449

99.417

0.671
  recA Streptococcus pyogenes NZ131

70.122

95.627

0.671
  recA Streptococcus mitis NCTC 12261

69.394

96.21

0.668
  recA Streptococcus mitis SK321

69.394

96.21

0.668
  recA Lactococcus lactis subsp. cremoris KW2

67.262

97.959

0.659
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.798

98.251

0.627
  recA Neisseria gonorrhoeae strain FA1090

65.337

95.044

0.621
  recA Neisseria gonorrhoeae MS11

65.337

95.044

0.621
  recA Neisseria gonorrhoeae MS11

65.337

95.044

0.621
  recA Ralstonia pseudosolanacearum GMI1000

67.732

91.254

0.618
  recA Helicobacter pylori strain NCTC11637

61.111

99.708

0.609
  recA Helicobacter pylori 26695

61.111

99.708

0.609
  recA Acinetobacter baumannii D1279779

60.714

97.959

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

95.335

0.595
  recA Glaesserella parasuis strain SC1401

63.438

93.294

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.952

90.671

0.589
  recA Vibrio cholerae strain A1552

64.952

90.671

0.589
  recA Acinetobacter baylyi ADP1

61.801

93.878

0.58
  recA Pseudomonas stutzeri DSM 10701

62.187

93.294

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.759

92.128

0.56