Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   I0K03_RS18130 Genome accession   NZ_CP064875
Coordinates   3619182..3620420 (-) Length   412 a.a.
NCBI ID   WP_087950641.1    Uniprot ID   -
Organism   Bacillus toyonensis strain P18     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3614182..3625420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0K03_RS18110 (I0K03_18110) spoVS 3614605..3614865 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  I0K03_RS18115 (I0K03_18115) - 3615015..3615809 (-) 795 WP_001221099.1 TIGR00282 family metallophosphoesterase -
  I0K03_RS18120 (I0K03_18120) rny 3615957..3617522 (-) 1566 WP_000204714.1 ribonuclease Y -
  I0K03_RS18125 (I0K03_18125) recA 3618006..3619037 (-) 1032 WP_200203279.1 recombinase RecA Machinery gene
  I0K03_RS18130 (I0K03_18130) cinA 3619182..3620420 (-) 1239 WP_087950641.1 competence/damage-inducible protein CinA Machinery gene
  I0K03_RS18135 (I0K03_18135) pgsA 3620441..3621019 (-) 579 WP_001052980.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I0K03_RS18140 (I0K03_18140) - 3621083..3621997 (-) 915 WP_000137455.1 helix-turn-helix domain-containing protein -
  I0K03_RS18145 (I0K03_18145) - 3622019..3622804 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  I0K03_RS18150 (I0K03_18150) - 3622943..3623191 (-) 249 WP_000114447.1 DUF3243 domain-containing protein -
  I0K03_RS18155 (I0K03_18155) ymfI 3623267..3623980 (-) 714 WP_000759614.1 elongation factor P 5-aminopentanone reductase -
  I0K03_RS18160 (I0K03_18160) yfmH 3624081..3625367 (-) 1287 WP_200203281.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45448.78 Da        Isoelectric Point: 5.4733

>NTDB_id=505552 I0K03_RS18130 WP_087950641.1 3619182..3620420(-) (cinA) [Bacillus toyonensis strain P18]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLGEELVYDENALALISDYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMRPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNAHEAEKLIQHMED
LILERVGEFFYGYDQEFLHYKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LSTDGAVSKECARYLAENVKKLLKADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=505552 I0K03_RS18130 WP_087950641.1 3619182..3620420(-) (cinA) [Bacillus toyonensis strain P18]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAACGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGCATTAATGTGTACTACCATACTGTAGTTGGAGATAATAACAAACGATTACAGCAGGCGATTG
AAGTTGCAGAAGAACGTGCGGATATGCTTATTTTTACAGGTGGATTAGGCCCGACAAAAGATGATTTGACGAAGGAAACA
ATTGCGTCTAGCTTAGGGGAAGAGCTTGTATATGACGAAAATGCATTAGCATTAATAAGCGATTATTTTAAGCGTACAGG
TCGTGAGTTCACTGAAAATAATAAAAAGCAGGCACTCGTTTTGAATGGAGCAACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGTTTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAAATGAGGCCAATGTAT
GTAAGTTATGTAGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTCTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAACCCGACAATCGCCCCGCTTGCGAATG
ATGGAGAAGTGACATTACGTTTAACTGCGAAGCATCAAAATGCTCATGAAGCAGAGAAACTCATTCAGCATATGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCACTATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTCTTCGGTAACCAAGTAACAGAAAGTGCTGGTG
TGTCTTCAGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACATGTACCTGAGGAAGTG
TTGTCTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAAAAATTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGACCAGATGCTTCAGAACATAAAGAGCCGGGAACAGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTTCCTCTAAATTTAAGCGGAAGTCGTCAACAAATTAGGGAACGCTCAGCAAAATAT
GGGTTTTATCATTTGTATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.466

100

0.595
  cinA Streptococcus mitis SK321

47.255

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.478
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.473
  cinA Streptococcus pneumoniae R6

46.539

100

0.473
  cinA Streptococcus pneumoniae D39

46.301

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus mutans UA159

45.32

98.544

0.447
  cinA Streptococcus suis isolate S10

41.27

91.748

0.379