Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IWH25_RS02785 Genome accession   NZ_CP064781
Coordinates   586528..587550 (+) Length   340 a.a.
NCBI ID   WP_203387838.1    Uniprot ID   A0A974SPX7
Organism   Azospira restricta strain DSM 18626     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 581528..592550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IWH25_RS02755 (IWH25_02755) ribBA 582353..583471 (+) 1119 WP_376990682.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  IWH25_RS02760 (IWH25_02760) ribH 583473..583946 (+) 474 WP_203387833.1 6,7-dimethyl-8-ribityllumazine synthase -
  IWH25_RS02765 (IWH25_02765) nusB 583949..584452 (+) 504 WP_203387834.1 transcription antitermination factor NusB -
  IWH25_RS02770 (IWH25_02770) thiL 584465..585427 (+) 963 WP_203387835.1 thiamine-phosphate kinase -
  IWH25_RS02775 (IWH25_02775) - 585420..585911 (+) 492 WP_238998979.1 phosphatidylglycerophosphatase A -
  IWH25_RS02780 (IWH25_02780) pncC 585911..586408 (+) 498 WP_203387837.1 nicotinamide-nucleotide amidase -
  IWH25_RS02785 (IWH25_02785) recA 586528..587550 (+) 1023 WP_203387838.1 recombinase RecA Machinery gene
  IWH25_RS02790 (IWH25_02790) recX 587554..588000 (+) 447 WP_203387839.1 recombination regulator RecX -
  IWH25_RS02795 (IWH25_02795) lptB 588003..588740 (+) 738 WP_203387840.1 LPS export ABC transporter ATP-binding protein -
  IWH25_RS02800 (IWH25_02800) rpoN/rpoN1 588783..590219 (+) 1437 WP_203387841.1 RNA polymerase factor sigma-54 Machinery gene
  IWH25_RS02805 (IWH25_02805) hpf 590233..590559 (+) 327 WP_203387842.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  IWH25_RS02810 (IWH25_02810) ptsN 590655..591101 (+) 447 WP_203387843.1 PTS IIA-like nitrogen regulatory protein PtsN -
  IWH25_RS02815 (IWH25_02815) hprK 591112..592047 (+) 936 WP_203387844.1 HPr(Ser) kinase/phosphatase -
  IWH25_RS02820 (IWH25_02820) - 592100..592417 (+) 318 WP_203387845.1 PsiF family protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36297.80 Da        Isoelectric Point: 6.1702

>NTDB_id=504692 IWH25_RS02785 WP_203387838.1 586528..587550(+) (recA) [Azospira restricta strain DSM 18626]
MDDNKAKALAAALAQIEKQFGKGSIMKMGEGSVEHDIQVVSTGSLGLDIALGIGGLPRGRVVEIYGPESSGKTTLTLQVV
AEMQKMGGTAAFIDAEHALDPSYAQKLGVNLNDLLISQPDTGEQALEIADMLVRSGGVDVIVIDSVAALTPRAEIEGEMG
DQMVGLHARLMSQALRKLTANIKKTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGDEVIGN
ETKVKVVKNKVSPPFKEAIFDILYGEGTSREGEIIELGVAHKLVDKSGAWYAYKGEKIGQGKDNAREFLKANPAIAQEIE
ARVREAVGVASPRPLEAAEA

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=504692 IWH25_RS02785 WP_203387838.1 586528..587550(+) (recA) [Azospira restricta strain DSM 18626]
ATGGACGACAACAAGGCAAAGGCACTGGCCGCCGCACTGGCGCAAATCGAGAAGCAGTTCGGCAAGGGCTCGATCATGAA
GATGGGCGAGGGCAGCGTCGAGCACGACATCCAGGTCGTCTCCACCGGCTCGCTCGGCCTCGACATCGCGCTCGGCATCG
GCGGCCTGCCGCGCGGCCGCGTCGTCGAGATCTACGGCCCGGAATCGTCGGGCAAGACGACGCTGACGCTGCAGGTCGTC
GCCGAAATGCAGAAGATGGGCGGCACCGCCGCCTTCATCGACGCCGAGCACGCGCTCGACCCGTCCTACGCGCAGAAGCT
CGGCGTGAACCTGAACGACCTGCTGATCTCGCAGCCGGACACCGGCGAGCAGGCGCTGGAAATCGCCGACATGCTGGTCC
GCTCGGGCGGCGTCGACGTGATCGTCATCGACTCGGTCGCCGCGCTCACCCCGCGCGCCGAGATCGAGGGCGAGATGGGC
GACCAGATGGTCGGCCTGCACGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTCACCGCCAACATCAAGAAGACGAACAC
GCTGGTGATCTTCATCAACCAGATCCGGATGAAGATCGGCGTCATGTTCGGCTCGCCGGAGACCACCACCGGCGGCAACG
CGCTCAAGTTCTACGCCTCGGTGCGCCTCGACATCCGCCGCATCGGCTCGATCAAGAAGGGCGACGAGGTGATCGGCAAC
GAAACCAAGGTCAAGGTGGTCAAGAACAAGGTCTCGCCGCCGTTCAAGGAGGCGATCTTCGACATCCTCTACGGCGAGGG
CACCTCACGCGAGGGCGAGATCATCGAGCTCGGCGTCGCCCACAAGCTGGTCGACAAGTCCGGCGCCTGGTATGCCTACA
AGGGCGAGAAGATCGGCCAGGGCAAGGACAACGCGCGCGAATTCCTGAAGGCCAACCCGGCGATCGCGCAGGAAATCGAA
GCCCGCGTCCGCGAAGCCGTCGGCGTCGCCTCGCCGCGCCCGCTGGAGGCCGCCGAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.803

92.353

0.765
  recA Pseudomonas stutzeri DSM 10701

74.251

98.235

0.729
  recA Neisseria gonorrhoeae MS11

72.948

96.765

0.706
  recA Neisseria gonorrhoeae MS11

72.948

96.765

0.706
  recA Neisseria gonorrhoeae strain FA1090

72.948

96.765

0.706
  recA Glaesserella parasuis strain SC1401

70.118

99.412

0.697
  recA Acinetobacter baylyi ADP1

72.308

95.588

0.691
  recA Acinetobacter baumannii D1279779

70.948

96.176

0.682
  recA Vibrio cholerae strain A1552

71.077

95.588

0.679
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.077

95.588

0.679
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.465

97.353

0.647
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.455

97.059

0.635
  recA Bacillus subtilis subsp. subtilis str. 168

65.35

96.765

0.632
  recA Helicobacter pylori 26695

62.391

100

0.629
  recA Helicobacter pylori strain NCTC11637

62.099

100

0.626
  recA Streptococcus mitis SK321

60.882

100

0.609
  recA Latilactobacillus sakei subsp. sakei 23K

62.5

96.471

0.603
  recA Streptococcus pneumoniae Rx1

62.006

96.765

0.6
  recA Streptococcus pneumoniae D39

62.006

96.765

0.6
  recA Streptococcus mitis NCTC 12261

62.006

96.765

0.6
  recA Streptococcus pneumoniae R6

62.006

96.765

0.6
  recA Streptococcus pneumoniae TIGR4

62.006

96.765

0.6
  recA Streptococcus mutans UA159

61.631

97.353

0.6
  recA Lactococcus lactis subsp. cremoris KW2

61.468

96.176

0.591
  recA Streptococcus pyogenes NZ131

60.606

97.059

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.111

95.294

0.582