Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CP31_RS06670 Genome accession   NC_017730
Coordinates   1427859..1428968 (-) Length   369 a.a.
NCBI ID   WP_013242109.1    Uniprot ID   A0AAU8PKK2
Organism   Corynebacterium pseudotuberculosis 31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1422859..1433968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP31_RS06650 (CP31_06690) - 1423723..1424859 (+) 1137 WP_014655525.1 GNAT family protein -
  CP31_RS06655 (CP31_06695) - 1424873..1425544 (-) 672 WP_014367211.1 hypothetical protein -
  CP31_RS06660 (CP31_06700) miaB 1425619..1427157 (-) 1539 WP_013242107.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  CP31_RS06665 (CP31_06705) recX 1427261..1427866 (-) 606 WP_014655527.1 recombination regulator RecX -
  CP31_RS06670 (CP31_06710) recA 1427859..1428968 (-) 1110 WP_013242109.1 recombinase RecA Machinery gene
  CP31_RS06675 (CP31_06715) - 1429220..1429432 (-) 213 WP_013242110.1 DUF3046 domain-containing protein -
  CP31_RS06680 (CP31_06720) - 1429517..1430110 (+) 594 WP_014367213.1 biotin transporter BioY -
  CP31_RS06685 (CP31_06725) - 1430114..1430806 (+) 693 WP_013242112.1 ABC transporter ATP-binding protein -
  CP31_RS06690 (CP31_06730) - 1430803..1431417 (+) 615 WP_048653412.1 energy-coupling factor transporter transmembrane protein EcfT -
  CP31_RS06695 (CP31_06735) - 1431499..1432341 (-) 843 WP_048653413.1 PspA/IM30 family protein -
  CP31_RS06700 (CP31_06740) - 1432472..1432804 (-) 333 WP_014401238.1 helix-turn-helix transcriptional regulator -
  CP31_RS06705 (CP31_06745) - 1432919..1433434 (-) 516 WP_014800568.1 nicotinamide-nucleotide amidohydrolase family protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39619.91 Da        Isoelectric Point: 4.8760

>NTDB_id=50399 CP31_RS06670 WP_013242109.1 1427859..1428968(-) (recA) [Corynebacterium pseudotuberculosis 31]
MAAKKNSKSQPATGDNRQKALDAALAMIEKDFGKGAVMRLGDDNRPPISAISSGNTAIDVALGIGGFPKGRIVEVYGPES
SGKTTVALHAIAQAQRAGGIAAFIDAEHALDPDYARKLGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAAL
TPKAEIEGEMGDSHVGLQARLMSQALRKMTGALYNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDVRRIQ
TLKDGQDAIGNRTRLKVVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVDNGIIKKSGSWFTYDGDQLGQGKEKVRLYL
KQTPELADEIEEKIFRALQIGKYANQNDALTDDPVDMVPNIDFDDEDNG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=50399 CP31_RS06670 WP_013242109.1 1427859..1428968(-) (recA) [Corynebacterium pseudotuberculosis 31]
ATGGCAGCTAAGAAAAATTCGAAGTCTCAGCCGGCAACAGGGGACAATCGGCAAAAGGCGCTCGACGCAGCCTTAGCTAT
GATCGAGAAAGACTTTGGCAAAGGCGCAGTAATGCGCCTTGGTGATGATAACCGCCCTCCGATTAGTGCTATTTCTTCCG
GGAACACTGCAATCGATGTTGCTCTTGGTATTGGAGGCTTTCCCAAGGGGCGCATTGTAGAGGTGTATGGACCTGAGTCT
TCAGGTAAAACAACCGTGGCGCTGCATGCTATAGCTCAAGCGCAGCGTGCTGGAGGAATTGCTGCTTTTATCGATGCGGA
ACACGCATTAGATCCGGATTATGCACGTAAACTTGGCGTAGACACAGATGCACTTTTGGTATCTCAACCAGATACAGGTG
AGCAAGCTCTGGAGATTGCAGATATGCTTGTTCGCTCTGGAGCTATAGATATTATTGTCATCGACTCTGTGGCCGCACTT
ACCCCTAAAGCAGAAATCGAAGGGGAAATGGGGGATAGCCACGTTGGTTTGCAAGCGCGTTTGATGAGTCAGGCGCTGCG
TAAGATGACCGGTGCTCTTTATAACTCGGGAACCACCGCTATCTTTATTAATCAGCTGCGCGAAAAGATTGGCGTGATGT
TTGGCTCGCCTGAGACGACTACGGGTGGCAAAGCGCTTAAGTTCTATGCTTCAGTTCGTTGTGATGTTCGGCGTATCCAA
ACGCTAAAGGACGGGCAGGATGCCATCGGTAACAGGACGCGGTTAAAGGTAGTAAAGAATAAGGTCTCGCCTCCATTTAA
AATCGCGGAATTTGACATCATGTATGGGGAAGGCATCTCTAGAGAATCCTCCATTATTGATTTGGGTGTAGATAATGGGA
TTATCAAAAAATCAGGCTCGTGGTTTACCTATGATGGTGATCAGCTTGGTCAGGGCAAAGAAAAAGTTCGTCTGTATTTA
AAGCAGACTCCTGAGCTTGCGGATGAAATTGAAGAGAAGATCTTCCGGGCATTGCAGATCGGAAAGTACGCTAACCAGAA
CGACGCACTTACTGATGATCCAGTAGACATGGTTCCTAATATCGATTTTGATGATGAGGACAATGGATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.776

90.786

0.588
  recA Pseudomonas stutzeri DSM 10701

63.45

92.683

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

67.398

86.45

0.583
  recA Lactococcus lactis subsp. cremoris KW2

61.877

92.412

0.572
  recA Neisseria gonorrhoeae strain FA1090

64.923

88.076

0.572
  recA Neisseria gonorrhoeae MS11

64.923

88.076

0.572
  recA Neisseria gonorrhoeae MS11

64.923

88.076

0.572
  recA Acinetobacter baumannii D1279779

65.123

87.805

0.572
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.444

89.702

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

60.231

94.038

0.566
  recA Glaesserella parasuis strain SC1401

62.018

91.328

0.566
  recA Streptococcus pyogenes NZ131

62.388

90.786

0.566
  recA Helicobacter pylori strain NCTC11637

64.506

87.805

0.566
  recA Helicobacter pylori 26695

64.198

87.805

0.564
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.609

88.618

0.564
  recA Streptococcus mutans UA159

60.767

91.87

0.558
  recA Vibrio cholerae strain A1552

63.58

87.805

0.558
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.58

87.805

0.558
  recA Streptococcus mitis NCTC 12261

61.231

88.076

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.581

90.515

0.539
  recA Streptococcus pneumoniae R6

60.923

88.076

0.537
  recA Streptococcus pneumoniae TIGR4

60.923

88.076

0.537
  recA Streptococcus mitis SK321

60.923

88.076

0.537
  recA Streptococcus pneumoniae D39

60.923

88.076

0.537
  recA Streptococcus pneumoniae Rx1

60.923

88.076

0.537
  recA Ralstonia pseudosolanacearum GMI1000

62.939

84.824

0.534

Multiple sequence alignment