Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IUH68_RS12400 Genome accession   NZ_CP064406
Coordinates   2481824..2482873 (-) Length   349 a.a.
NCBI ID   WP_002318847.1    Uniprot ID   A0A2D0BN80
Organism   Enterococcus faecium strain PR05720-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2476824..2487873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUH68_RS12390 (IUH68_12390) proC 2478972..2479778 (+) 807 WP_002318848.1 pyrroline-5-carboxylate reductase -
  IUH68_RS12395 (IUH68_12395) rny 2479857..2481413 (-) 1557 WP_002287336.1 ribonuclease Y -
  IUH68_RS12400 (IUH68_12400) recA 2481824..2482873 (-) 1050 WP_002318847.1 recombinase RecA Machinery gene
  IUH68_RS12405 (IUH68_12405) cinA 2482982..2484223 (-) 1242 WP_002318846.1 competence/damage-inducible protein A Machinery gene
  IUH68_RS12410 (IUH68_12410) pgsA 2484463..2485041 (-) 579 WP_002298210.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IUH68_RS12415 (IUH68_12415) - 2485250..2486173 (-) 924 WP_080129768.1 RodZ domain-containing protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37485.86 Da        Isoelectric Point: 4.8330

>NTDB_id=501915 IUH68_RS12400 WP_002318847.1 2481824..2482873(-) (recA) [Enterococcus faecium strain PR05720-3]
MADDRKAALDAALKKIEKSYGKGSIMKLGEKIDQQISTIPSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGD
SHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNR
TKIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGRENAKIYMANHPEMMAEVSA
LVRAAYGIGEEAAVPEDEKGQEELPLVEE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=501915 IUH68_RS12400 WP_002318847.1 2481824..2482873(-) (recA) [Enterococcus faecium strain PR05720-3]
TTGGCAGATGATCGTAAAGCAGCCTTAGATGCTGCACTGAAAAAAATTGAAAAGAGCTATGGTAAAGGCTCTATTATGAA
ATTGGGCGAAAAAATCGACCAGCAAATCTCTACAATTCCAAGTGGCTCTCTTGCGTTAGATGTCGCTTTAGGTGTCGGCG
GTTATCCCCGTGGACGTATTATCGAAGTATACGGACCTGAAAGTTCAGGTAAAACAACAGTGGCGCTACATGCTATTGCA
GAAGTACAAAAAAATGGCGGAACTGCCGCTTTCATCGATGCTGAGCATGCGTTAGATCCGCAATATGCACAAAAATTAGG
TGTGAATATCGATGAACTACTTCTTTCACAGCCTGATACAGGAGAACAAGGTCTGGAGATCGCTGATGCTTTAGTATCAA
GTGGAGCTGTAGACATCGTAGTAGTCGATTCAGTTGCCGCTTTAGTTCCACGAGCAGAAATCGACGGCGAAATGGGCGAC
TCACATGTCGGGTTACAAGCACGTTTGATGTCTCAAGCATTGCGTAAACTCTCTGGTTCGATTAACAAAACAAAAACAAT
CGCTATTTTCATCAACCAAATCCGTGAAAAAGTAGGCGTGATGTTTGGGAATCCAGAAATCACGCCTGGAGGACGCGCAT
TGAAATTTTACGCAACGATCCGTTTAGAAGTACGCCGTGCAGAACAATTGAAACAAGGAACAGATATTGTTGGTAACCGT
ACAAAGATCAAAGTCGTGAAAAACAAAGTAGCACCTCCTTTCAAAATCGCTGAAGTAGATGTCATGTATGGCTTAGGTAT
CTCACAAGAAGGAGAACTTCTAGACATGGCAGTAGAAAAAGACATCGTTGATAAAAGTGGTGCTTGGTATTCTTATAAAG
AAGATCGGATTGGCCAAGGACGGGAAAACGCTAAAATCTATATGGCTAATCATCCTGAAATGATGGCAGAAGTTTCTGCT
CTAGTTAGAGCAGCTTATGGTATTGGCGAAGAAGCCGCTGTCCCAGAAGATGAAAAAGGACAAGAAGAATTGCCTTTAGT
AGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D0BN80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

78.386

99.427

0.779
  recA Bacillus subtilis subsp. subtilis str. 168

78.248

94.842

0.742
  recA Streptococcus pneumoniae R6

69.034

100

0.696
  recA Streptococcus pneumoniae Rx1

69.034

100

0.696
  recA Streptococcus pneumoniae D39

69.034

100

0.696
  recA Streptococcus pneumoniae TIGR4

69.034

100

0.696
  recA Streptococcus mitis SK321

71.429

96.275

0.688
  recA Streptococcus mitis NCTC 12261

70.833

96.275

0.682
  recA Streptococcus pyogenes NZ131

69.789

94.842

0.662
  recA Streptococcus mutans UA159

66.571

99.427

0.662
  recA Lactococcus lactis subsp. cremoris KW2

66.567

95.989

0.639
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

93.696

0.596
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.35

98.281

0.593
  recA Neisseria gonorrhoeae strain FA1090

62.614

94.269

0.59
  recA Neisseria gonorrhoeae MS11

62.614

94.269

0.59
  recA Neisseria gonorrhoeae MS11

62.614

94.269

0.59
  recA Ralstonia pseudosolanacearum GMI1000

61.28

93.983

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

93.123

0.573
  recA Acinetobacter baumannii D1279779

61.61

92.55

0.57
  recA Vibrio cholerae strain A1552

61.61

92.55

0.57
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.61

92.55

0.57
  recA Helicobacter pylori 26695

58.065

97.708

0.567
  recA Helicobacter pylori strain NCTC11637

58.065

97.708

0.567
  recA Acinetobacter baylyi ADP1

61.3

92.55

0.567
  recA Pseudomonas stutzeri DSM 10701

60.494

92.837

0.562
  recA Glaesserella parasuis strain SC1401

60.748

91.977

0.559