Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   A7A12_RS16990 Genome accession   NZ_CP076285
Coordinates   3485824..3486291 (+) Length   155 a.a.
NCBI ID   WP_096985516.1    Uniprot ID   -
Organism   Escherichia coli strain 41     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3480824..3491291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A12_RS16945 (A7A12_16950) rplP 3480934..3481344 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  A7A12_RS16950 (A7A12_16955) rpsC 3481357..3482058 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  A7A12_RS16955 (A7A12_16960) rplV 3482076..3482408 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  A7A12_RS16960 (A7A12_16965) rpsS 3482423..3482701 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  A7A12_RS16965 (A7A12_16970) rplB 3482718..3483539 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  A7A12_RS16970 (A7A12_16975) rplW 3483557..3483859 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  A7A12_RS16975 (A7A12_16980) rplD 3483856..3484461 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  A7A12_RS16980 (A7A12_16985) rplC 3484472..3485101 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  A7A12_RS16985 (A7A12_16990) rpsJ 3485134..3485445 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  A7A12_RS16990 (A7A12_16995) pilD 3485824..3486291 (+) 468 WP_096985516.1 A24 family peptidase Machinery gene
  A7A12_RS16995 (A7A12_17000) bfr 3486288..3486764 (-) 477 WP_000675515.1 bacterioferritin -
  A7A12_RS17000 (A7A12_17005) bfd 3486837..3487031 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  A7A12_RS17005 (A7A12_17010) tuf 3487214..3488398 (-) 1185 WP_000031783.1 elongation factor Tu -
  A7A12_RS17010 (A7A12_17015) fusA 3488469..3490583 (-) 2115 WP_000124700.1 elongation factor G -
  A7A12_RS17015 (A7A12_17020) rpsG 3490680..3491150 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16904.06 Da        Isoelectric Point: 8.1296

>NTDB_id=501915 A7A12_RS16990 WP_096985516.1 3485824..3486291(+) (pilD) [Escherichia coli strain 41]
MDATLPILILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=501915 A7A12_RS16990 WP_096985516.1 3485824..3486291(+) (pilD) [Escherichia coli strain 41]
ATGGACGCTACCCTTCCCATTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361
  pilD Neisseria gonorrhoeae MS11

38.095

94.839

0.361