Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IQ680_RS25330 Genome accession   NZ_CP064266
Coordinates   4912129..4913160 (-) Length   343 a.a.
NCBI ID   WP_098335895.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain N451-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4907129..4918160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ680_RS25310 - 4907724..4908686 (-) 963 WP_243526599.1 dipeptidase -
  IQ680_RS25315 spoVS 4908710..4908970 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  IQ680_RS25320 - 4909119..4909913 (-) 795 WP_003199419.1 TIGR00282 family metallophosphoesterase -
  IQ680_RS25325 rny 4910129..4911697 (-) 1569 WP_098335894.1 ribonuclease Y -
  IQ680_RS25330 recA 4912129..4913160 (-) 1032 WP_098335895.1 recombinase RecA Machinery gene
  IQ680_RS25335 cinA 4913303..4914541 (-) 1239 WP_243523818.1 competence/damage-inducible protein A Machinery gene
  IQ680_RS25340 pgsA 4914562..4915140 (-) 579 WP_098335897.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IQ680_RS25345 - 4915205..4916119 (-) 915 WP_243523821.1 helix-turn-helix domain-containing protein -
  IQ680_RS25350 - 4916132..4916917 (-) 786 WP_098335899.1 DUF3388 domain-containing protein -
  IQ680_RS25355 - 4917055..4917303 (-) 249 WP_098335900.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37303.48 Da        Isoelectric Point: 4.9904

>NTDB_id=500427 IQ680_RS25330 WP_098335895.1 4912129..4913160(-) (recA) [Bacillus pseudomycoides strain N451-2]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERKISTIPSGSLALDVALGVGGYPRGRVIEIYGPESSGKTTVSLHAIAE
VQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT
KIKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENAKQFLKENPELRDEIAFF
IREHHGIGEDSAAESMEDGTLLD

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=500427 IQ680_RS25330 WP_098335895.1 4912129..4913160(-) (recA) [Bacillus pseudomycoides strain N451-2]
ATGAGTGATCGTCAAGCGGCATTAGATATGGCGTTAAAACAAATAGAGAAGCAATTTGGTAAAGGTTCTATTATGAAATT
AGGAGAACAGGCAGAACGTAAAATTTCTACAATTCCAAGTGGTTCGTTAGCACTTGATGTAGCTTTAGGTGTTGGTGGTT
ACCCGCGCGGACGTGTTATCGAAATTTATGGACCTGAAAGCTCAGGTAAAACAACGGTTTCCTTACATGCGATTGCAGAA
GTGCAACGTCAAGGTGGACAAGCAGCATTTATTGATGCAGAACATGCAATGGATCCTGTATATGCACAAAAATTGGGTGT
TAATATTGATGAATTACTATTATCGCAGCCTGACACAGGGGAACAAGGTTTAGAAATTGCAGAAGCATTAGTACGAAGCG
GTGCGATTGATATCATCGTTATTGACTCTGTAGCAGCTCTTGTACCAAAAGCAGAAATCGAAGGGGAAATGGGTGACTCT
CACGTCGGTTTACAAGCACGTTTAATGTCACAAGCGCTTCGTAAGCTTTCCGGTGCAATTAACAAATCCAAAACAATTGC
AATCTTTATTAACCAAATTCGTGAAAAAGTTGGGGTTATGTTCGGGAACCCAGAAACAACTCCAGGTGGTCGTGCGTTGA
AATTCTATTCAACAGTTCGTCTAGAAGTGCGTCGTGCTGAGCAGTTAAAACAAGGTAACGACATTGTTGGTAACAAAACA
AAAATAAAAGTAGTAAAAAATAAAGTAGCACCTCCTTTCCGTGTTGCAGAAGTTGATATTATGTACGGAGAAGGGATTTC
AAGAGAAGGCGAAATTTTAGATATGGCTTCTGAACTTGATATCGTTCAAAAAAGTGGCGCTTGGTATTCTTATAATGAAG
AACGTTTAGGGCAAGGGCGCGAAAATGCAAAGCAATTTTTAAAAGAAAATCCAGAATTAAGAGATGAAATTGCATTCTTT
ATTCGTGAACACCATGGAATTGGTGAAGATTCTGCTGCTGAAAGTATGGAAGATGGAACTCTTCTTGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.462

95.335

0.834
  recA Latilactobacillus sakei subsp. sakei 23K

75.841

95.335

0.723
  recA Streptococcus mitis NCTC 12261

68.713

99.708

0.685
  recA Streptococcus mitis SK321

68.713

99.708

0.685
  recA Streptococcus pneumoniae Rx1

67.93

100

0.679
  recA Streptococcus pneumoniae D39

67.93

100

0.679
  recA Streptococcus pneumoniae R6

67.93

100

0.679
  recA Streptococcus pneumoniae TIGR4

67.93

100

0.679
  recA Streptococcus pyogenes NZ131

70.122

95.627

0.671
  recA Streptococcus mutans UA159

68.452

97.959

0.671
  recA Lactococcus lactis subsp. cremoris KW2

67.365

97.376

0.656
  recA Ralstonia pseudosolanacearum GMI1000

66.055

95.335

0.63
  recA Neisseria gonorrhoeae strain FA1090

65.644

95.044

0.624
  recA Neisseria gonorrhoeae MS11

65.644

95.044

0.624
  recA Neisseria gonorrhoeae MS11

65.644

95.044

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.804

95.044

0.606
  recA Helicobacter pylori 26695

63.222

95.918

0.606
  recA Helicobacter pylori strain NCTC11637

63.222

95.918

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

93.586

0.601
  recA Vibrio cholerae strain A1552

64.174

93.586

0.601
  recA Acinetobacter baumannii D1279779

60.714

97.959

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

95.335

0.595
  recA Glaesserella parasuis strain SC1401

63.636

93.003

0.592
  recA Acinetobacter baylyi ADP1

62.422

93.878

0.586
  recA Pseudomonas stutzeri DSM 10701

62.5

93.294

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.076

92.128

0.563