Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   IQ680_RS25335 Genome accession   NZ_CP064266
Coordinates   4913303..4914541 (-) Length   412 a.a.
NCBI ID   WP_243523818.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain N451-2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 4908303..4919541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ680_RS25315 spoVS 4908710..4908970 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  IQ680_RS25320 - 4909119..4909913 (-) 795 WP_003199419.1 TIGR00282 family metallophosphoesterase -
  IQ680_RS25325 rny 4910129..4911697 (-) 1569 WP_098335894.1 ribonuclease Y -
  IQ680_RS25330 recA 4912129..4913160 (-) 1032 WP_098335895.1 recombinase RecA Machinery gene
  IQ680_RS25335 cinA 4913303..4914541 (-) 1239 WP_243523818.1 competence/damage-inducible protein A Machinery gene
  IQ680_RS25340 pgsA 4914562..4915140 (-) 579 WP_098335897.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IQ680_RS25345 - 4915205..4916119 (-) 915 WP_243523821.1 helix-turn-helix domain-containing protein -
  IQ680_RS25350 - 4916132..4916917 (-) 786 WP_098335899.1 DUF3388 domain-containing protein -
  IQ680_RS25355 - 4917055..4917303 (-) 249 WP_098335900.1 DUF3243 domain-containing protein -
  IQ680_RS25360 ymfI 4917533..4918246 (-) 714 WP_243523824.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45612.08 Da        Isoelectric Point: 5.9454

>NTDB_id=500428 IQ680_RS25335 WP_243523818.1 4913303..4914541(-) (cinA) [Bacillus pseudomycoides strain N451-2]
MNAEIIAVGTELLLGQITNTNAKFLSEKLASIGINVYYHTVVGDNNHRLQEAIQVAEKRADILIFTGGLGPTKDDLTKET
IASTLQEQLIYDEVALTSIGEYFKRTGREFTENNKKQALVLKGSTVFANDHGMAPGMGLAKNEKVYILLPGPPKEMKPMY
TSYVEPFLRNFTTEEHIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLASDGEVMLRLTAKHHDVKQAEVLIQHVED
LILERVGEFFYGYNQDFLHNKAIDLLKKKGLTLACAESLTGGLFGNQVTENAGVSPVFKGGVICYHNNVKQHILHVPEET
LQTVGAVSEQCARYLADNVKTLLKADIGISFTGVAGPDASENKEPGTVFIGLAIEGEPTEVFSLKLSGSRQQIRERSTKY
GFYHLYKKLEEM

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=500428 IQ680_RS25335 WP_243523818.1 4913303..4914541(-) (cinA) [Bacillus pseudomycoides strain N451-2]
ATGAATGCCGAAATTATTGCGGTTGGAACAGAATTGTTACTCGGACAAATTACAAATACAAATGCAAAGTTTTTATCTGA
AAAATTAGCATCCATTGGCATCAATGTGTATTATCATACTGTTGTAGGTGATAATAATCATCGTTTACAAGAAGCAATTC
AAGTCGCTGAGAAGCGCGCAGATATACTCATTTTTACTGGTGGATTAGGACCGACAAAGGATGATTTAACGAAAGAAACA
ATTGCTTCAACTCTGCAAGAACAACTTATTTATGATGAAGTCGCATTAACGTCAATTGGCGAATATTTTAAACGTACAGG
ACGCGAATTCACAGAAAATAATAAGAAACAAGCGCTTGTTTTAAAAGGGTCAACTGTATTTGCAAATGATCACGGGATGG
CACCAGGTATGGGATTAGCTAAGAACGAGAAGGTGTATATTTTATTGCCAGGCCCACCAAAAGAAATGAAACCGATGTAT
ACAAGTTACGTAGAGCCGTTTTTACGTAATTTTACAACTGAAGAACATATATATTCCCGTGTTCTTCGCTTTTTCGGCAT
TGGAGAATCTCAACTAGAAGTGAAAGTTCAAGATTTAATTGATGGGCAAACGAATCCAACAATTGCTCCGCTAGCTTCAG
ATGGAGAAGTAATGCTTCGGTTGACCGCTAAACATCACGATGTAAAGCAGGCAGAAGTGCTCATTCAACATGTAGAAGAT
TTGATTCTAGAGCGAGTAGGGGAATTCTTCTATGGATATAATCAAGATTTTCTTCATAATAAAGCAATTGATTTATTAAA
GAAAAAAGGTTTAACTTTAGCTTGTGCAGAAAGTTTAACAGGCGGTCTGTTTGGAAATCAAGTAACAGAAAATGCCGGCG
TATCTCCCGTGTTTAAAGGCGGTGTGATTTGCTATCATAACAATGTGAAGCAACATATATTACATGTACCTGAAGAGACA
TTGCAAACAGTAGGAGCGGTTAGTGAACAGTGTGCGCGTTATCTTGCTGACAATGTTAAGACGCTTTTAAAAGCAGATAT
CGGAATTAGCTTTACTGGCGTAGCAGGGCCGGATGCTTCGGAAAATAAAGAACCAGGAACTGTATTTATTGGGTTAGCAA
TAGAGGGTGAGCCGACAGAGGTATTTTCTCTTAAATTGAGTGGAAGTCGTCAGCAAATTAGAGAACGTTCGACAAAATAT
GGATTTTATCATTTGTACAAAAAACTAGAAGAGATGTGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

57.317

99.515

0.57
  cinA Streptococcus mitis SK321

44.63

100

0.454
  cinA Streptococcus pneumoniae TIGR4

44.391

100

0.451
  cinA Streptococcus mitis NCTC 12261

43.914

100

0.447
  cinA Streptococcus pneumoniae Rx1

43.914

100

0.447
  cinA Streptococcus pneumoniae R6

43.914

100

0.447
  cinA Streptococcus mutans UA159

45.074

98.544

0.444
  cinA Streptococcus pneumoniae D39

43.675

100

0.444
  cinA Streptococcus suis isolate S10

40.318

91.505

0.369