Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IRT44_RS16145 Genome accession   NZ_CP064048
Coordinates   3286244..3287302 (-) Length   352 a.a.
NCBI ID   WP_171564713.1    Uniprot ID   -
Organism   Brevibacillus sedimenti strain PCH 117     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3281244..3292302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRT44_RS16130 (IRT44_16040) ltrA 3281824..3283083 (-) 1260 WP_230077001.1 group II intron reverse transcriptase/maturase -
  IRT44_RS16135 (IRT44_16045) rny 3283672..3285210 (-) 1539 WP_230077002.1 ribonuclease Y -
  IRT44_RS16140 (IRT44_16050) - 3285499..3286140 (-) 642 WP_212132442.1 regulatory protein RecX -
  IRT44_RS16145 (IRT44_16055) recA 3286244..3287302 (-) 1059 WP_171564713.1 recombinase RecA Machinery gene
  IRT44_RS16150 (IRT44_16060) - 3287467..3289053 (-) 1587 WP_171564712.1 DEAD/DEAH box helicase -
  IRT44_RS16155 (IRT44_16065) cinA 3289060..3290301 (-) 1242 WP_212132443.1 competence/damage-inducible protein A Machinery gene
  IRT44_RS16160 (IRT44_16070) pgsA 3290439..3291014 (-) 576 WP_171564711.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37834.14 Da        Isoelectric Point: 4.8157

>NTDB_id=498750 IRT44_RS16145 WP_171564713.1 3286244..3287302(-) (recA) [Brevibacillus sedimenti strain PCH 117]
MSDRRAALENALRQIEKQFGKGSIMKLGDMANVQVSTVSSGALALDIALGVGGFPRGRIIEIYGPESSGKTTVALHAIAE
VQRQGGQAAFIDAEHALDPVYAAKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASIRLDVRKAEAIKVGNDVVGSKT
KIKVVKNKVAPPFKTAEVDIMYGEGISKEGSILDIGAEIDVVQKSGAWYSFNDERLGQGRENAKLFLKENPEVAAQIEAK
VREYYSLNPSSIPSMEPINDPEQDEEPVFDFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=498750 IRT44_RS16145 WP_171564713.1 3286244..3287302(-) (recA) [Brevibacillus sedimenti strain PCH 117]
TTGTCAGATCGTCGCGCTGCTTTGGAAAACGCATTGCGTCAAATAGAAAAACAGTTCGGGAAAGGGTCCATCATGAAGCT
GGGGGACATGGCCAACGTTCAGGTTTCCACGGTCTCCAGCGGTGCGCTTGCCCTCGACATCGCCCTGGGTGTGGGCGGAT
TCCCGCGTGGACGGATCATCGAAATTTACGGACCGGAATCCTCCGGTAAAACGACGGTTGCCCTTCACGCCATCGCCGAA
GTGCAGCGCCAGGGCGGACAAGCTGCGTTTATCGACGCAGAGCACGCACTGGACCCGGTCTACGCGGCAAAATTGGGAGT
AAACATTGACGAACTGCTGCTCTCCCAGCCTGACACAGGGGAGCAGGCGCTGGAAATCGCCGAGGCGCTGGTGCGTTCCG
GTGCCGTTGACATCATCGTCGTAGACTCGGTAGCCGCGCTCGTGCCAAAAGCAGAGATTGAAGGCGAAATGGGAGACTCC
CACGTGGGGCTGCAGGCCCGCCTCATGTCGCAGGCGCTGCGCAAGCTGTCCGGTGCCATCAACAAATCGAAAACCATCGC
CATCTTCATCAACCAGCTCCGGGAGAAAGTGGGCGTCATGTTCGGCAATCCGGAGACGACTCCGGGTGGGCGCGCGCTCA
AGTTCTACGCGAGCATTCGCTTGGACGTGCGCAAGGCGGAAGCGATCAAGGTGGGCAACGACGTGGTCGGCAGCAAGACC
AAGATCAAGGTCGTGAAAAACAAGGTGGCGCCGCCGTTCAAAACTGCCGAAGTGGACATCATGTACGGTGAAGGCATCTC
CAAAGAGGGCAGCATTCTCGACATCGGCGCGGAGATTGATGTGGTTCAAAAGAGCGGAGCATGGTACTCCTTCAACGATG
AGCGTCTGGGTCAAGGACGGGAGAACGCCAAGCTCTTCCTCAAGGAAAATCCGGAAGTGGCGGCGCAAATCGAAGCCAAA
GTACGTGAGTATTACAGCCTCAATCCCAGCTCCATCCCGAGCATGGAGCCGATCAACGATCCGGAGCAGGATGAGGAACC
GGTATTTGATTTCGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.627

94.318

0.77
  recA Latilactobacillus sakei subsp. sakei 23K

70.468

97.159

0.685
  recA Streptococcus mitis SK321

70.909

93.75

0.665
  recA Streptococcus mutans UA159

64.624

100

0.659
  recA Streptococcus pneumoniae Rx1

70.303

93.75

0.659
  recA Streptococcus pneumoniae D39

70.303

93.75

0.659
  recA Streptococcus pneumoniae R6

70.303

93.75

0.659
  recA Streptococcus pneumoniae TIGR4

70.303

93.75

0.659
  recA Streptococcus mitis NCTC 12261

70.303

93.75

0.659
  recA Lactococcus lactis subsp. cremoris KW2

69.091

93.75

0.648
  recA Streptococcus pyogenes NZ131

70.062

92.045

0.645
  recA Vibrio cholerae strain A1552

66.061

93.75

0.619
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.061

93.75

0.619
  recA Ralstonia pseudosolanacearum GMI1000

68.254

89.489

0.611
  recA Glaesserella parasuis strain SC1401

60.632

98.864

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.756

97.727

0.594
  recA Pseudomonas stutzeri DSM 10701

60.933

97.443

0.594
  recA Neisseria gonorrhoeae MS11

62.388

95.17

0.594
  recA Neisseria gonorrhoeae MS11

62.388

95.17

0.594
  recA Neisseria gonorrhoeae strain FA1090

62.388

95.17

0.594
  recA Acinetobacter baylyi ADP1

60.057

98.864

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.691

92.898

0.582
  recA Acinetobacter baumannii D1279779

63.551

91.193

0.58
  recA Helicobacter pylori strain NCTC11637

59.357

97.159

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.125

90.909

0.574
  recA Helicobacter pylori 26695

59.064

97.159

0.574