Detailed information NTG0498751

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: KHS93_RS01490
• Genome accession: NZ_CP075547
• Coordinates: 268504..269625 (+)
• Length: 373 a.a.
• NCBI ID: WP_003156660.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain SN16-1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 263504..274625

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KHS93_RS01470 (KHS93_01470)	-	263811..264806 (-)	996	WP_014304282.1	DUF5105 domain-containing protein	-
KHS93_RS01475 (KHS93_01475)	-	264935..266335 (+)	1401	WP_069473135.1	YcdB/YcdC domain-containing protein	-
KHS93_RS01480 (KHS93_01480)	-	266536..267894 (+)	1359	WP_003156662.1	YcdB/YcdC domain-containing protein	-
KHS93_RS01485 (KHS93_01485)	-	267891..268394 (-)	504	WP_003156661.1	M15 family metallopeptidase	-
KHS93_RS01490 (KHS93_01490)	rapF	268504..269625 (+)	1122	WP_003156660.1	tetratricopeptide repeat protein	Regulator
KHS93_RS01495 (KHS93_01495)	-	269741..270520 (+)	780	WP_014304287.1	glucose 1-dehydrogenase	-
KHS93_RS01500 (KHS93_01500)	-	270603..272282 (+)	1680	WP_069448528.1	alpha-glucosidase	-
KHS93_RS01505 (KHS93_01505)	-	272473..273432 (+)	960	WP_024084862.1	metal ABC transporter substrate-binding protein	-
KHS93_RS01510 (KHS93_01510)	-	273487..274182 (+)	696	WP_003156655.1	metal ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44333.58 Da
• Isoelectric Point: 5.1691

>NTDB_id=498751 KHS93_RS01490 WP_003156660.1 268504..269625(+) (rapF) [Bacillus amyloliquefaciens strain SN16-1]
MKSKIPSEEVAVKMNEWYKLIRAFEADKAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHKRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=498751 KHS93_RS01490 WP_003156660.1 268504..269625(+) (rapF) [Bacillus amyloliquefaciens strain SN16-1]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TAAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAAAATCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTAGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGAGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGGCAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAGTGGGAAG
ATGAGATCTATATGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATCCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATAAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (187-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402