Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   IRT44_RS16155 Genome accession   NZ_CP064048
Coordinates   3289060..3290301 (-) Length   413 a.a.
NCBI ID   WP_212132443.1    Uniprot ID   -
Organism   Brevibacillus sedimenti strain PCH 117     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3284060..3295301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRT44_RS16140 (IRT44_16050) - 3285499..3286140 (-) 642 WP_212132442.1 regulatory protein RecX -
  IRT44_RS16145 (IRT44_16055) recA 3286244..3287302 (-) 1059 WP_171564713.1 recombinase RecA Machinery gene
  IRT44_RS16150 (IRT44_16060) - 3287467..3289053 (-) 1587 WP_171564712.1 DEAD/DEAH box helicase -
  IRT44_RS16155 (IRT44_16065) cinA 3289060..3290301 (-) 1242 WP_212132443.1 competence/damage-inducible protein A Machinery gene
  IRT44_RS16160 (IRT44_16070) pgsA 3290439..3291014 (-) 576 WP_171564711.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IRT44_RS16165 (IRT44_16075) rimO 3291015..3292361 (-) 1347 WP_171564710.1 30S ribosomal protein S12 methylthiotransferase RimO -
  IRT44_RS16170 (IRT44_16080) - 3292741..3293646 (-) 906 WP_212132444.1 RodZ domain-containing protein -
  IRT44_RS16175 (IRT44_16085) - 3293659..3294438 (-) 780 WP_171564708.1 YmfK family protein -
  IRT44_RS16180 (IRT44_16090) - 3294561..3294824 (-) 264 WP_171564707.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44692.24 Da        Isoelectric Point: 5.3543

>NTDB_id=498751 IRT44_RS16155 WP_212132443.1 3289060..3290301(-) (cinA) [Brevibacillus sedimenti strain PCH 117]
MRAEIIAVGTELLLGQIANTNAQYLSQKLAEIGIGVYFHTVVGDNAERLASVIRQAAARSELIVFTGGLGPTQDDLTKET
VAEHLGVGLTIDQTAMARIEAFFRQRGITMTENNRKQALVLAGSHVFPNDHGMAPGMAAQRDGRTFVLLPGPPSELYPMV
EKYVMPYLIGLKPEQQVFHSRVLRFYGIGESALEERLIDLIEQQDNPTIAPYAKEFEVTLRITARAANVDDAERLIQPVE
REIRERLGEYIYATGETSLHEVLVDELNRRGATIACAESCTGGTVASLITSVPGSSAVMRGGVVCYTNEAKRQMLNVPEE
VLAEAGAISEQTARLLAENIRATLGADVGISVTGVAGPDPAEGKPVGLVYVGVAVEGLPTLVKELRLAGRRQAIVGRAAK
FALFYALQRLKER

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=498751 IRT44_RS16155 WP_212132443.1 3289060..3290301(-) (cinA) [Brevibacillus sedimenti strain PCH 117]
ATGAGAGCGGAGATAATCGCGGTTGGAACGGAACTGTTGCTTGGGCAGATCGCCAATACGAACGCCCAGTATCTCTCCCA
AAAGCTCGCCGAGATTGGTATCGGCGTCTATTTCCACACAGTGGTGGGGGATAACGCCGAACGGCTGGCTAGCGTGATTC
GTCAGGCCGCGGCCCGGTCCGAGCTGATCGTGTTCACCGGCGGACTGGGACCGACCCAGGATGACTTGACCAAGGAGACG
GTGGCGGAGCACCTGGGCGTCGGGTTGACCATTGATCAGACGGCGATGGCGCGGATCGAGGCGTTTTTCCGCCAGCGTGG
CATTACGATGACGGAAAACAACCGCAAGCAGGCACTGGTGCTGGCGGGCAGCCACGTCTTCCCGAACGATCACGGCATGG
CACCGGGCATGGCAGCGCAGCGCGACGGACGCACGTTTGTACTGCTGCCGGGGCCGCCCAGTGAACTGTATCCGATGGTA
GAGAAATACGTGATGCCGTATCTGATCGGCTTAAAGCCGGAACAGCAAGTGTTTCATTCGCGCGTGCTGCGCTTCTACGG
CATCGGCGAATCGGCGCTGGAAGAACGGTTGATCGACCTGATTGAACAGCAGGACAACCCGACCATAGCCCCGTATGCCA
AAGAGTTTGAAGTGACGCTGCGGATTACGGCCAGGGCGGCGAACGTAGACGATGCGGAGCGGCTGATTCAACCTGTAGAG
CGGGAAATACGTGAGCGGTTGGGCGAGTACATCTACGCGACAGGAGAAACGTCACTGCACGAGGTGCTGGTGGACGAACT
GAATCGCAGGGGGGCGACGATCGCCTGTGCGGAAAGTTGTACCGGGGGAACGGTCGCATCCCTCATTACGTCCGTACCCG
GCAGCTCTGCCGTCATGCGCGGAGGCGTGGTGTGCTATACCAACGAGGCGAAGCGGCAGATGCTCAACGTGCCGGAAGAA
GTCCTGGCAGAGGCAGGGGCCATCAGCGAGCAGACGGCCCGGTTGCTCGCCGAAAATATCAGGGCGACGCTCGGCGCGGA
CGTCGGCATCTCCGTGACGGGGGTGGCCGGCCCAGACCCTGCGGAAGGCAAACCGGTGGGACTGGTCTACGTTGGCGTTG
CCGTGGAAGGACTGCCCACGCTGGTCAAGGAGCTTCGCCTGGCCGGGCGGCGCCAGGCCATCGTCGGCCGGGCAGCGAAA
TTTGCGTTGTTTTACGCGTTGCAACGACTAAAAGAAAGGTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

49.757

99.758

0.496
  cinA Streptococcus mitis NCTC 12261

46.539

100

0.472
  cinA Streptococcus pneumoniae TIGR4

46.301

100

0.47
  cinA Streptococcus pneumoniae Rx1

46.062

100

0.467
  cinA Streptococcus mitis SK321

46.062

100

0.467
  cinA Streptococcus pneumoniae R6

46.062

100

0.467
  cinA Streptococcus pneumoniae D39

45.823

100

0.465
  cinA Streptococcus mutans UA159

47.368

96.61

0.458
  cinA Streptococcus suis isolate S10

41.772

95.642

0.4