Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IMI45_RS06615 Genome accession   NZ_CP063414
Coordinates   1299163..1300215 (+) Length   350 a.a.
NCBI ID   WP_003251602.1    Uniprot ID   A0AAN0YN71
Organism   Parageobacillus thermoglucosidasius strain 23.6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1294163..1305215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMI45_RS06590 (IMI45_06525) - 1294935..1295183 (+) 249 WP_003251611.1 DUF3243 domain-containing protein -
  IMI45_RS06595 (IMI45_06530) - 1295324..1296115 (+) 792 WP_256834665.1 DUF3388 domain-containing protein -
  IMI45_RS06600 (IMI45_06535) - 1296140..1297024 (+) 885 WP_125010165.1 helix-turn-helix domain-containing protein -
  IMI45_RS06605 (IMI45_06540) pgsA 1297080..1297658 (+) 579 WP_003251605.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IMI45_RS06610 (IMI45_06545) cinA 1297753..1299000 (+) 1248 WP_256834667.1 competence/damage-inducible protein A Machinery gene
  IMI45_RS06615 (IMI45_06550) recA 1299163..1300215 (+) 1053 WP_003251602.1 recombinase RecA Machinery gene
  IMI45_RS06620 (IMI45_06555) rny 1300694..1302259 (+) 1566 WP_003251600.1 ribonuclease Y -
  IMI45_RS06625 (IMI45_06560) - 1302343..1303137 (+) 795 WP_256834668.1 TIGR00282 family metallophosphoesterase -
  IMI45_RS06630 (IMI45_06565) spoVS 1303264..1303524 (+) 261 WP_003251598.1 stage V sporulation protein SpoVS -
  IMI45_RS06635 (IMI45_06570) - 1303609..1304532 (+) 924 WP_125010898.1 dipeptidase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38109.29 Da        Isoelectric Point: 5.2095

>NTDB_id=495471 IMI45_RS06615 WP_003251602.1 1299163..1300215(+) (recA) [Parageobacillus thermoglucosidasius strain 23.6]
MNQDRQAALEQALKQIERQFGKGSIMRLGEQTDRKISTVSSGSLALDIALGVGGYPRGRIIEIYGPESSGKTTVALHAIA
EVQKQGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGD
AHVGLQARLMSQALRKLSGAINKSKAIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQIKQGNEMVGNK
TKIKVVKNKVAPPFKTADVDIMYGEGISREGEIIDMASELDIVQKSGSWYSYKDERLGQGRENAKQFLKENPHIAEEIAQ
EIRKHYGIESPSSSNGANELQQEEFGLLEE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=495471 IMI45_RS06615 WP_003251602.1 1299163..1300215(+) (recA) [Parageobacillus thermoglucosidasius strain 23.6]
GTGAATCAAGATCGTCAAGCTGCCTTGGAACAGGCGTTAAAACAGATCGAAAGGCAATTTGGAAAAGGCTCGATCATGAG
ACTTGGAGAGCAAACGGATCGTAAAATATCGACCGTGTCAAGCGGATCGCTTGCGCTCGATATCGCTTTAGGTGTTGGCG
GATATCCGCGCGGCCGCATTATTGAAATATATGGGCCTGAGTCTTCCGGGAAAACAACGGTTGCGCTCCACGCGATCGCC
GAAGTCCAGAAACAAGGCGGACAAGCCGCATTTATCGACGCAGAGCACGCGCTTGATCCGATTTATGCGCAAAAATTAGG
CGTGAACATTGATGAATTGCTGCTTTCCCAGCCGGATACAGGAGAGCAGGCGCTGGAAATTGCCGAGGCGCTGGTAAGAA
GCGGCGCGGTTGATATTATCGTGATTGACTCTGTCGCGGCGCTCGTGCCGAAAGCGGAAATTGAAGGGGAAATGGGCGAC
GCACACGTTGGTTTGCAGGCCCGCCTCATGTCGCAAGCATTGCGCAAATTATCCGGAGCGATTAACAAATCAAAAGCGAT
TGCGATTTTCATCAACCAAATTCGCGAAAAAGTCGGTGTGATGTTCGGAAATCCGGAGACAACTCCAGGCGGCCGCGCGT
TAAAATTTTATGCTTCGGTCCGTCTTGAGGTGCGCCGTGCCGAACAAATAAAACAAGGCAACGAGATGGTCGGAAATAAA
ACGAAAATTAAAGTCGTGAAAAATAAAGTTGCCCCTCCATTTAAAACGGCCGACGTAGATATTATGTATGGGGAAGGCAT
TTCCCGCGAAGGCGAAATTATTGATATGGCTTCCGAGTTAGATATCGTGCAAAAAAGCGGATCCTGGTATTCATATAAAG
ACGAGCGCTTAGGCCAAGGCCGCGAAAATGCGAAACAATTTTTAAAAGAAAATCCGCATATCGCTGAAGAAATTGCCCAA
GAAATTCGCAAACACTACGGGATTGAGTCTCCATCAAGCTCGAATGGCGCAAACGAGCTGCAACAGGAGGAATTTGGACT
TTTGGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.544

93.429

0.809
  recA Latilactobacillus sakei subsp. sakei 23K

77.231

92.857

0.717
  recA Streptococcus pneumoniae Rx1

71.429

94

0.671
  recA Streptococcus pneumoniae D39

71.429

94

0.671
  recA Streptococcus pneumoniae R6

71.429

94

0.671
  recA Streptococcus mitis NCTC 12261

71.429

94

0.671
  recA Streptococcus pneumoniae TIGR4

71.429

94

0.671
  recA Streptococcus mitis SK321

71.125

94

0.669
  recA Streptococcus pyogenes NZ131

66.954

99.429

0.666
  recA Streptococcus mutans UA159

69.605

94

0.654
  recA Lactococcus lactis subsp. cremoris KW2

68.693

94

0.646
  recA Ralstonia pseudosolanacearum GMI1000

66.159

93.714

0.62
  recA Acinetobacter baumannii D1279779

63.081

98.286

0.62
  recA Acinetobacter baylyi ADP1

61.605

99.714

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.848

94.286

0.611
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.741

92.571

0.609
  recA Vibrio cholerae strain A1552

65.741

92.571

0.609
  recA Glaesserella parasuis strain SC1401

61.207

99.429

0.609
  recA Pseudomonas stutzeri DSM 10701

63.063

95.143

0.6
  recA Neisseria gonorrhoeae MS11

63.636

94.286

0.6
  recA Neisseria gonorrhoeae strain FA1090

63.636

94.286

0.6
  recA Neisseria gonorrhoeae MS11

63.636

94.286

0.6
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.024

93.714

0.6
  recA Helicobacter pylori strain NCTC11637

62.805

93.714

0.589
  recA Helicobacter pylori 26695

62.805

93.714

0.589
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.145

90.571

0.563