Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   IMI45_RS06610 Genome accession   NZ_CP063414
Coordinates   1297753..1299000 (+) Length   415 a.a.
NCBI ID   WP_256834667.1    Uniprot ID   -
Organism   Parageobacillus thermoglucosidasius strain 23.6     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1292753..1304000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMI45_RS06580 (IMI45_06515) yfmH 1292824..1294116 (+) 1293 WP_185222935.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  IMI45_RS06585 (IMI45_06520) ymfI 1294156..1294872 (+) 717 WP_003251613.1 elongation factor P 5-aminopentanone reductase -
  IMI45_RS06590 (IMI45_06525) - 1294935..1295183 (+) 249 WP_003251611.1 DUF3243 domain-containing protein -
  IMI45_RS06595 (IMI45_06530) - 1295324..1296115 (+) 792 WP_256834665.1 DUF3388 domain-containing protein -
  IMI45_RS06600 (IMI45_06535) - 1296140..1297024 (+) 885 WP_125010165.1 helix-turn-helix domain-containing protein -
  IMI45_RS06605 (IMI45_06540) pgsA 1297080..1297658 (+) 579 WP_003251605.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IMI45_RS06610 (IMI45_06545) cinA 1297753..1299000 (+) 1248 WP_256834667.1 competence/damage-inducible protein A Machinery gene
  IMI45_RS06615 (IMI45_06550) recA 1299163..1300215 (+) 1053 WP_003251602.1 recombinase RecA Machinery gene
  IMI45_RS06620 (IMI45_06555) rny 1300694..1302259 (+) 1566 WP_003251600.1 ribonuclease Y -
  IMI45_RS06625 (IMI45_06560) - 1302343..1303137 (+) 795 WP_256834668.1 TIGR00282 family metallophosphoesterase -
  IMI45_RS06630 (IMI45_06565) spoVS 1303264..1303524 (+) 261 WP_003251598.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45008.93 Da        Isoelectric Point: 6.9029

>NTDB_id=495470 IMI45_RS06610 WP_256834667.1 1297753..1299000(+) (cinA) [Parageobacillus thermoglucosidasius strain 23.6]
MNAEIIAVGSELLLGQIANTNAQFLSAQLAELGINVYFHTVVGDNADRLEKAVKVAQTRANLIIFTGGLGPTKDDLTKET
IARLLQRELVIDKEALHSIEAYFARTGRTMTENNKKQALVLQGSTVLRNEHGMAPGMAMTVGAITYMLLPGPPKEMQPMF
SKYGRPFLMEKLDRHERIESRVLRFFGIGESQLETEIEDLIEQQSNPTIAPLAGDGEVTLRLTAKHHSEIEAKKLLDQTE
QAILMRVGRYFYGYNDDTLFKNTVKLLKEKKKTVAAAESLTGGLFLTELTAIPGASQVVRGGVVCYTNEVKEKVLHVPAS
VLATDGAVSERCAKLLAENVRALCGADIGISFTGVAGPDPLEGKPVGTVYIGISTSENETDVHALALSGPRDAIRTRTAK
YGCSIILKKLAAACL

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=495470 IMI45_RS06610 WP_256834667.1 1297753..1299000(+) (cinA) [Parageobacillus thermoglucosidasius strain 23.6]
TTGAATGCGGAAATTATCGCTGTTGGCTCCGAATTATTGCTTGGGCAGATCGCTAACACGAATGCGCAGTTTTTATCTGC
CCAGCTCGCTGAACTTGGCATTAACGTCTATTTTCACACTGTTGTTGGCGACAATGCCGACCGTTTGGAAAAAGCGGTAA
AAGTGGCACAAACACGAGCGAATTTAATTATTTTCACAGGCGGACTTGGTCCGACGAAAGACGATTTGACAAAAGAGACG
ATCGCCCGCCTATTGCAACGGGAACTTGTCATTGACAAGGAGGCGCTTCATTCCATTGAAGCGTATTTTGCCCGCACAGG
CCGAACAATGACAGAAAACAATAAAAAACAGGCGCTTGTCTTGCAAGGCTCGACTGTGTTAAGAAACGAACATGGAATGG
CGCCAGGAATGGCAATGACGGTCGGTGCGATTACGTATATGCTTCTCCCAGGTCCCCCAAAGGAAATGCAGCCGATGTTC
AGCAAATACGGGCGCCCGTTCTTAATGGAGAAGCTGGACCGCCATGAGCGCATCGAATCGCGTGTGCTACGCTTTTTCGG
CATCGGTGAATCGCAGCTTGAGACAGAAATCGAAGATCTTATTGAGCAACAATCAAACCCGACGATCGCCCCTCTTGCCG
GCGATGGGGAAGTAACGTTGCGTTTGACTGCAAAACACCATTCGGAAATCGAAGCCAAAAAGCTGCTTGACCAGACCGAA
CAAGCGATTTTAATGCGCGTCGGCCGTTATTTTTACGGCTACAATGACGACACGTTGTTTAAAAATACGGTGAAGCTGTT
GAAGGAAAAAAAGAAAACGGTCGCGGCTGCCGAAAGCCTCACTGGCGGGCTTTTCTTAACGGAATTAACGGCCATTCCCG
GCGCTTCCCAAGTGGTTCGCGGCGGGGTCGTCTGCTATACCAATGAAGTGAAGGAGAAAGTGCTTCACGTTCCCGCTTCT
GTTTTAGCAACCGACGGAGCGGTAAGTGAACGCTGCGCGAAGCTGTTGGCGGAAAATGTCCGCGCGCTTTGCGGCGCAGA
TATTGGCATTAGCTTTACAGGCGTGGCAGGACCGGATCCGCTTGAAGGAAAGCCGGTCGGTACCGTATATATTGGCATTT
CCACTTCTGAAAATGAAACAGATGTCCACGCCCTCGCGTTATCCGGCCCGCGTGATGCAATCCGCACTCGCACTGCTAAA
TACGGCTGCTCCATTATATTAAAAAAATTGGCAGCTGCATGTTTGTAG

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60.539

98.313

0.595
  cinA Streptococcus mitis SK321

46.905

100

0.475
  cinA Streptococcus mitis NCTC 12261

46.429

100

0.47
  cinA Streptococcus mutans UA159

48.622

96.145

0.467
  cinA Streptococcus pneumoniae TIGR4

46.19

100

0.467
  cinA Streptococcus pneumoniae Rx1

46.19

100

0.467
  cinA Streptococcus pneumoniae R6

46.19

100

0.467
  cinA Streptococcus pneumoniae D39

45.952

100

0.465
  cinA Streptococcus suis isolate S10

42.564

93.976

0.4