Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IMX26_RS02505 Genome accession   NZ_CP063353
Coordinates   525218..526234 (+) Length   338 a.a.
NCBI ID   WP_195160137.1    Uniprot ID   A0A7M1Q2X8
Organism   Clostridium sp. 'deep sea'     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 520218..531234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMX26_RS02480 (IMX26_02480) - 520308..521162 (-) 855 WP_195160132.1 GT-D fold domain-containing glycosyltransferase -
  IMX26_RS02485 (IMX26_02485) - 521181..521954 (-) 774 WP_195160133.1 hypothetical protein -
  IMX26_RS02490 (IMX26_02490) - 521947..522900 (-) 954 WP_195160134.1 glycosyltransferase -
  IMX26_RS02495 (IMX26_02495) - 522897..524189 (-) 1293 WP_195160135.1 nucleotide sugar dehydrogenase -
  IMX26_RS02500 (IMX26_02500) - 524265..525035 (+) 771 WP_195160136.1 glycosyltransferase family 2 protein -
  IMX26_RS02505 (IMX26_02505) recA 525218..526234 (+) 1017 WP_195160137.1 recombinase RecA Machinery gene
  IMX26_RS02515 (IMX26_02515) rny 526721..528262 (+) 1542 WP_195160138.1 ribonuclease Y -
  IMX26_RS02520 (IMX26_02520) - 528360..529808 (-) 1449 WP_195160139.1 isoform II -
  IMX26_RS02525 (IMX26_02525) scnR 529958..530656 (+) 699 WP_195160140.1 response regulator transcription factor Regulator

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 36987.52 Da        Isoelectric Point: 7.4192

>NTDB_id=494523 IMX26_RS02505 WP_195160137.1 525218..526234(+) (recA) [Clostridium sp. 'deep sea']
MEKQKALDMALRQIEKQFGKGSIMKLGDNTKLLNINVIPTGCIDIDVALGVGGVPRGRIIELYGPESSGKTTVALHMLAS
AQQNGGMVAFIDAEHALDPVYAQRLGVDVDNLLVSQPDSGEQALEITETLVRSNAIDMIVIDSVAALVPRAELEGDMGDS
HVGLHARLMSQAMRKLTGVINKSKTVVIFINQIREKVGVMFGNPETTTGGRALKFYSSVRLEVRRSSQIKNGTDVIGNRT
RIKIVKNKVAPPFRLAEFDIMYGEGISLNGSILDKAVEIGLVNKAGSWYSYESERLGQGRENTKNYLKENPEFAAMLEKK
VRVHFGLEKEDSEVTDSK

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=494523 IMX26_RS02505 WP_195160137.1 525218..526234(+) (recA) [Clostridium sp. 'deep sea']
ATGGAAAAGCAGAAAGCTTTAGATATGGCTTTACGCCAAATTGAAAAACAATTTGGCAAAGGTAGTATAATGAAGTTAGG
CGATAATACAAAATTGCTTAATATAAACGTTATTCCTACTGGCTGTATAGATATTGATGTTGCTTTGGGTGTTGGAGGAG
TTCCACGTGGACGAATTATAGAGCTGTATGGACCAGAGTCATCAGGAAAAACTACCGTTGCCTTACATATGTTAGCTAGT
GCGCAACAAAATGGTGGAATGGTAGCGTTTATTGATGCAGAACATGCTCTAGATCCTGTTTATGCCCAGAGACTTGGAGT
GGATGTAGATAATTTATTAGTATCTCAACCTGATTCTGGAGAGCAAGCTCTTGAAATTACCGAGACTTTAGTTAGAAGTA
ATGCTATTGATATGATTGTTATTGACTCAGTAGCTGCACTTGTACCAAGAGCTGAATTAGAAGGAGATATGGGAGATTCT
CATGTTGGTTTACACGCTAGATTAATGTCTCAAGCAATGAGAAAATTAACTGGTGTTATTAATAAATCTAAAACAGTAGT
AATCTTTATTAACCAAATTCGTGAAAAAGTTGGCGTAATGTTTGGTAATCCAGAAACAACTACTGGCGGAAGAGCCTTAA
AATTCTATTCTTCAGTGCGTTTAGAAGTTAGAAGGTCTAGTCAAATAAAAAATGGTACAGATGTTATTGGAAATAGAACC
AGAATAAAAATAGTTAAAAATAAAGTTGCTCCACCATTTAGATTGGCTGAATTTGACATTATGTATGGTGAAGGAATTTC
GCTTAATGGAAGTATTTTAGACAAAGCTGTAGAGATAGGTTTGGTTAACAAAGCGGGTTCATGGTATTCGTATGAAAGTG
AGCGATTAGGGCAAGGACGCGAAAACACTAAGAATTACCTAAAAGAGAACCCGGAATTTGCAGCTATGTTAGAAAAGAAA
GTAAGGGTGCATTTTGGCTTAGAAAAAGAGGACAGTGAAGTTACGGATTCTAAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(5-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7M1Q2X8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

71.865

96.746

0.695
  recA Latilactobacillus sakei subsp. sakei 23K

65.644

96.45

0.633
  recA Streptococcus mitis NCTC 12261

62.17

100

0.627
  recA Neisseria gonorrhoeae MS11

62.874

98.817

0.621
  recA Neisseria gonorrhoeae MS11

62.874

98.817

0.621
  recA Neisseria gonorrhoeae strain FA1090

62.874

98.817

0.621
  recA Streptococcus mitis SK321

63.636

97.633

0.621
  recA Streptococcus pneumoniae D39

63.03

97.633

0.615
  recA Streptococcus pneumoniae Rx1

63.03

97.633

0.615
  recA Streptococcus pneumoniae R6

63.03

97.633

0.615
  recA Streptococcus pneumoniae TIGR4

63.03

97.633

0.615
  recA Streptococcus mutans UA159

61.493

99.112

0.609
  recA Streptococcus pyogenes NZ131

62.006

97.337

0.604
  recA Lactococcus lactis subsp. cremoris KW2

60.059

100

0.601
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.813

94.675

0.595
  recA Vibrio cholerae strain A1552

62.813

94.675

0.595
  recA Pseudomonas stutzeri DSM 10701

60.36

98.521

0.595
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.162

96.746

0.592
  recA Ralstonia pseudosolanacearum GMI1000

63.694

92.899

0.592
  recA Glaesserella parasuis strain SC1401

61.994

94.97

0.589
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.043

96.45

0.589
  recA Helicobacter pylori 26695

60.303

97.633

0.589
  recA Helicobacter pylori strain NCTC11637

60.303

97.633

0.589
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.18

95.266

0.583
  recA Acinetobacter baylyi ADP1

61.562

94.675

0.583
  recA Acinetobacter baumannii D1279779

60.938

94.675

0.577