Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   IMX26_RS02525 Genome accession   NZ_CP063353
Coordinates   529958..530656 (+) Length   232 a.a.
NCBI ID   WP_195160140.1    Uniprot ID   A0A7M1Q340
Organism   Clostridium sp. 'deep sea'     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 524958..535656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMX26_RS02505 (IMX26_02505) recA 525218..526234 (+) 1017 WP_195160137.1 recombinase RecA Machinery gene
  IMX26_RS02515 (IMX26_02515) rny 526721..528262 (+) 1542 WP_195160138.1 ribonuclease Y -
  IMX26_RS02520 (IMX26_02520) - 528360..529808 (-) 1449 WP_195160139.1 isoform II -
  IMX26_RS02525 (IMX26_02525) scnR 529958..530656 (+) 699 WP_195160140.1 response regulator transcription factor Regulator
  IMX26_RS02530 (IMX26_02530) - 530672..532051 (+) 1380 WP_195160141.1 HAMP domain-containing sensor histidine kinase -
  IMX26_RS02570 (IMX26_02570) sigH 533192..533863 (+) 672 Protein_499 RNA polymerase sporulation sigma factor SigH -
  IMX26_RS02575 (IMX26_02575) - 534024..534641 (+) 618 WP_195160142.1 histidine phosphatase family protein -
  IMX26_RS02580 (IMX26_02580) - 534652..535461 (+) 810 WP_195160143.1 hypothetical protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26119.54 Da        Isoelectric Point: 6.6460

>NTDB_id=494524 IMX26_RS02525 WP_195160140.1 529958..530656(+) (scnR) [Clostridium sp. 'deep sea']
MSHLNKSILLIDDEPQIIKLLETILRKDGFNQIFSALTVAEARSIITNKNPDIVVLDIMLPDGDGFSFINEIKRFRDIPV
LFLTARGEADDRVLGLGLGADDYIVKPFMPRELALRIKAILKRTYSHGIEKKQAIINLPACIINLNKAEVIKGNETIQLT
AKEHAILSMLYENLNSIITLDSLCQAAWDDNSYGYENTLMVHIRHIREKIEEIPSKPVSLVTVRGLGYKLVV

Nucleotide


Download         Length: 699 bp        

>NTDB_id=494524 IMX26_RS02525 WP_195160140.1 529958..530656(+) (scnR) [Clostridium sp. 'deep sea']
GTGAGTCATTTAAATAAAAGCATTCTTTTAATAGATGATGAGCCACAAATAATTAAGTTACTTGAAACAATTCTAAGAAA
AGATGGCTTTAATCAGATATTTTCTGCTTTAACTGTTGCAGAAGCAAGGTCTATTATAACAAATAAAAACCCTGATATTG
TTGTACTTGATATAATGCTTCCAGATGGTGATGGTTTTTCATTTATAAATGAAATAAAAAGATTTCGAGATATACCGGTA
CTGTTTCTTACAGCAAGGGGTGAAGCAGATGATCGGGTTTTAGGACTAGGTCTTGGAGCCGATGACTACATTGTTAAACC
GTTTATGCCTCGTGAGCTTGCTTTAAGAATTAAAGCTATTTTGAAACGAACCTATTCACATGGTATAGAAAAAAAACAAG
CAATAATAAATCTGCCAGCCTGCATTATTAATTTGAATAAAGCTGAAGTAATAAAGGGCAATGAAACAATTCAACTTACT
GCCAAAGAGCATGCAATATTATCTATGTTGTATGAAAATTTAAATAGCATTATTACCTTAGATAGCTTATGTCAAGCTGC
ATGGGATGATAACTCTTATGGCTATGAAAACACACTAATGGTACATATTCGTCATATACGTGAAAAAATTGAAGAAATTC
CATCTAAGCCTGTTTCTCTAGTTACTGTAAGGGGGCTTGGCTATAAGTTAGTGGTGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7M1Q340

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

48.707

100

0.487
  vicR Streptococcus mutans UA159

37.339

100

0.375