Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   SSAL_RS09800 Genome accession   NC_017594
Coordinates   2079415..2080554 (-) Length   379 a.a.
NCBI ID   WP_014633715.1    Uniprot ID   -
Organism   Streptococcus salivarius 57.I     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2074415..2085554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL_RS09790 (Ssal_02109) spx 2077762..2078160 (-) 399 WP_002886328.1 transcriptional regulator Spx -
  SSAL_RS09795 (Ssal_02110) - 2078298..2079284 (-) 987 WP_045002009.1 IS30 family transposase -
  SSAL_RS09800 (Ssal_02111) recA 2079415..2080554 (-) 1140 WP_014633715.1 recombinase RecA Machinery gene
  SSAL_RS09805 (Ssal_02112) cinA 2080590..2081861 (-) 1272 WP_014633716.1 competence/damage-inducible protein A Machinery gene
  SSAL_RS09810 (Ssal_02113) - 2081958..2082512 (-) 555 WP_014633717.1 DNA-3-methyladenine glycosylase I -
  SSAL_RS09815 (Ssal_02114) ruvA 2082521..2083111 (-) 591 WP_014633718.1 Holliday junction branch migration protein RuvA -
  SSAL_RS09820 (Ssal_02115) - 2083268..2083489 (-) 222 WP_014633719.1 hypothetical protein -

Sequence


Protein


Download         Length: 379 a.a.        Molecular weight: 40965.54 Da        Isoelectric Point: 4.8001

>NTDB_id=49436 SSAL_RS09800 WP_014633715.1 2079415..2080554(-) (recA) [Streptococcus salivarius 57.I]
MAKKTKKTEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSYNGEKIGQGSE
NAKKYLADHPEIFEEIDHKVRVHYGLIEPDEEDIVEEAQVEETSDELVLDLDSTIEIEE

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=49436 SSAL_RS09800 WP_014633715.1 2079415..2080554(-) (recA) [Streptococcus salivarius 57.I]
GTGGCTAAGAAAACAAAGAAAACAGAAGAAATTACAAAGAAATTTGGAGATGAGCGTCGTAAAGCACTTGATGATGCTTT
GAAGAATATTGAAAAAGATTTTGGTAAAGGTGCAGTGATGCGTCTTGGTGAGCGTGCAGAGCAGAAAGTTCAAGTTATGA
GTTCAGGCTCGCTAGCTTTGGATATTGCTCTTGGTGCAGGTGGTTATCCTAAAGGTCGTATTATTGAAATTTACGGACCA
GAATCATCAGGTAAGACAACTGTAGCCCTCCATGCTGTTGCTCAAACACAAAAAGAAGGCGGAATTGCTGCCTTTATCGA
TGCAGAGCATGCCCTTGACCCTGCTTATGCGGCAGCCCTAGGTGTTAATATTGATGAGCTTCTTTTGTCACAACCTGATT
CAGGTGAACAAGGTCTCGAAATTGCCGGTAAGCTGATTGACTCTGGTGCAGTTGATTTGGTTGTTGTTGACTCAGTTGCA
GCTTTGGTACCTCGTGCAGAAATTGATGGAGATATTGGTGACAGCCATGTCGGACTTCAAGCGCGTATGATGAGTCAAGC
CATGCGTAAGCTTTCTGCTTCTATCAACAAAACAAAAACAATTGCTATCTTCATTAACCAATTGCGTGAAAAAGTTGGTA
TTATGTTTGGTAATCCAGAAACAACCCCTGGTGGACGTGCTCTAAAATTCTATGCATCAGTACGTCTTGATGTACGTGGA
AATACGCAAATCAAAGGGACTGGTGATAAAAAAGACCAAAATGTTGGTAAGGAAACTAAAATTAAGGTTGTTAAAAACAA
GGTTGCTCCACCATTTAAAGAAGCCTTTGTTGAAATTATGTATGGTGAAGGGATTTCACAAACAGGTGAGCTTGTAAAAA
TCGCTAGTGACTTAGGCATTATTCAAAAAGCTGGAGCGTGGTTCTCATACAATGGAGAGAAGATTGGTCAAGGATCTGAA
AATGCTAAAAAATATTTGGCAGATCATCCAGAAATTTTTGAAGAAATTGATCATAAAGTACGTGTACACTATGGTTTGAT
TGAACCAGATGAAGAGGATATTGTTGAAGAAGCACAAGTTGAAGAAACATCTGATGAACTTGTTTTAGACCTAGATTCAA
CCATTGAAATTGAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

89.556

100

0.905

  recA Streptococcus pyogenes NZ131

89.974

100

0.9

  recA Streptococcus mitis NCTC 12261

86.684

100

0.876

  recA Streptococcus mitis SK321

86.614

100

0.871

  recA Streptococcus pneumoniae Rx1

85.455

100

0.868

  recA Streptococcus pneumoniae D39

85.455

100

0.868

  recA Streptococcus pneumoniae R6

85.455

100

0.868

  recA Streptococcus pneumoniae TIGR4

85.455

100

0.868

  recA Lactococcus lactis subsp. cremoris KW2

77.714

92.348

0.718

  recA Latilactobacillus sakei subsp. sakei 23K

68.935

89.182

0.615

  recA Bacillus subtilis subsp. subtilis str. 168

68.085

86.807

0.591

  recA Glaesserella parasuis strain SC1401

56.486

97.625

0.551

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.767

89.446

0.544

  recA Acinetobacter baumannii D1279779

62.462

85.752

0.536

  recA Vibrio cholerae strain A1552

59.238

89.974

0.533

  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.238

89.974

0.533

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

85.224

0.533

  recA Acinetobacter baylyi ADP1

62.154

85.752

0.533

  recA Neisseria gonorrhoeae strain FA1090

61.027

87.335

0.533

  recA Neisseria gonorrhoeae MS11

61.027

87.335

0.533

  recA Neisseria gonorrhoeae MS11

61.027

87.335

0.533

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.812

91.029

0.517

  recA Helicobacter pylori strain NCTC11637

56.305

89.974

0.507

  recA Helicobacter pylori 26695

56.305

89.974

0.507

  recA Ralstonia pseudosolanacearum GMI1000

57.879

87.071

0.504

  recA Pseudomonas stutzeri DSM 10701

58.462

85.752

0.501


Multiple sequence alignment