Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   SSAL_RS09805 Genome accession   NC_017594
Coordinates   2080590..2081861 (-) Length   423 a.a.
NCBI ID   WP_014633716.1    Uniprot ID   -
Organism   Streptococcus salivarius 57.I     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2075590..2086861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL_RS09790 (Ssal_02109) spx 2077762..2078160 (-) 399 WP_002886328.1 transcriptional regulator Spx -
  SSAL_RS09795 (Ssal_02110) - 2078298..2079284 (-) 987 WP_045002009.1 IS30 family transposase -
  SSAL_RS09800 (Ssal_02111) recA 2079415..2080554 (-) 1140 WP_014633715.1 recombinase RecA Machinery gene
  SSAL_RS09805 (Ssal_02112) cinA 2080590..2081861 (-) 1272 WP_014633716.1 competence/damage-inducible protein A Machinery gene
  SSAL_RS09810 (Ssal_02113) - 2081958..2082512 (-) 555 WP_014633717.1 DNA-3-methyladenine glycosylase I -
  SSAL_RS09815 (Ssal_02114) ruvA 2082521..2083111 (-) 591 WP_014633718.1 Holliday junction branch migration protein RuvA -
  SSAL_RS09820 (Ssal_02115) - 2083268..2083489 (-) 222 WP_014633719.1 hypothetical protein -
  SSAL_RS09825 (Ssal_02116) mutL 2083620..2085563 (-) 1944 WP_014633720.1 DNA mismatch repair endonuclease MutL -
  SSAL_RS09830 (Ssal_02117) - 2085613..2085918 (-) 306 WP_045002011.1 hypothetical protein -
  SSAL_RS09835 (Ssal_02118) - 2086097..2086534 (+) 438 WP_014633722.1 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 45865.07 Da        Isoelectric Point: 5.1900

>NTDB_id=49437 SSAL_RS09805 WP_014633716.1 2080590..2081861(-) (cinA) [Streptococcus salivarius 57.I]
MKAELIAVGTEILTGQITNTNAQFLSEKLAELGIDVYFHTAVGDNENRLLSVLDQASQRSDLVILCGGLGPTEDDLTKQT
LAKFLGKELVFDEEASKKLDSFFATRPKHTRTPNNERQAQIVEGAIPLQNLTGLAVGGIITAQGVTYVVLPGPPSELKPM
VNQELIPALTENHSSLYSRVLRFFGVGESQLVTILKEFIVNQTDPTIAPYAKVGEVTLRLSTKASSQEEADQKLDVLEKQ
IRSTKTLDGKSLSDFIYGYGESNSLAFEAFRLLKHHGKTITAAESLTAGLFQASIADFSGASQVFKGGFVTYSIEEKAKM
LDIPLSQLEEHGVVSHFTAEKMAEGARAKTDSDYGIALTGVAGPDSLEGHPAGTVFIGIADRNQVRSIKVVIGGRSRSDV
RYISTLYAFNLVRQALLQEDNLI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=49437 SSAL_RS09805 WP_014633716.1 2080590..2081861(-) (cinA) [Streptococcus salivarius 57.I]
ATGAAAGCTGAATTGATTGCAGTAGGAACTGAAATCTTAACCGGGCAAATCACCAATACCAATGCCCAATTTTTATCTGA
GAAACTAGCTGAACTAGGAATTGACGTGTATTTTCACACAGCAGTAGGAGATAATGAAAACCGCCTACTTTCAGTTCTTG
ATCAAGCCAGTCAGCGTAGTGATTTAGTCATACTTTGTGGTGGACTTGGCCCTACTGAGGACGACCTAACCAAGCAAACA
CTGGCTAAGTTCTTAGGAAAAGAACTCGTTTTTGATGAGGAAGCTAGTAAAAAACTGGATAGTTTCTTTGCTACTCGTCC
TAAACACACACGAACGCCTAATAATGAACGTCAAGCACAAATTGTTGAGGGGGCTATTCCCTTGCAAAATCTCACAGGTC
TTGCAGTTGGAGGCATCATTACTGCTCAAGGGGTGACCTATGTAGTCTTACCTGGTCCACCAAGTGAACTCAAACCTATG
GTGAATCAAGAACTTATTCCAGCTCTTACAGAGAATCACTCAAGTCTTTATTCGAGAGTCCTAAGATTCTTTGGCGTTGG
AGAAAGTCAATTAGTGACTATTCTGAAGGAGTTTATTGTTAACCAAACGGATCCAACCATAGCTCCATACGCTAAAGTGG
GGGAAGTAACACTTCGCTTGTCAACAAAGGCTTCTTCGCAAGAAGAAGCAGATCAAAAACTAGATGTTTTAGAGAAACAA
ATTCGTTCGACTAAAACTCTAGATGGAAAATCCTTATCTGATTTCATTTATGGATATGGAGAGTCTAATAGTTTAGCCTT
TGAAGCTTTTCGCTTGCTTAAGCACCATGGCAAGACTATCACTGCAGCTGAAAGCCTAACAGCAGGTTTATTTCAGGCTA
GTATTGCTGATTTTTCAGGGGCCTCACAAGTATTTAAAGGTGGATTTGTTACTTATAGCATTGAAGAAAAAGCTAAAATG
TTGGATATTCCCTTGTCGCAACTAGAAGAACATGGTGTTGTCAGTCATTTTACTGCAGAAAAAATGGCTGAAGGTGCTCG
AGCTAAAACAGATAGCGATTATGGAATTGCACTTACCGGTGTAGCTGGACCAGATTCATTAGAAGGACACCCAGCAGGTA
CGGTATTTATTGGTATTGCTGATAGGAATCAAGTAAGGTCAATCAAGGTTGTTATAGGTGGAAGAAGTCGTTCTGATGTT
AGATATATTAGTACCCTCTATGCCTTTAACCTAGTTCGCCAAGCTTTATTACAAGAAGACAACTTGATTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(264-415)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

75.418

99.054

0.747
  cinA Streptococcus mitis NCTC 12261

74.702

99.054

0.74
  cinA Streptococcus pneumoniae TIGR4

73.986

99.054

0.733
  cinA Streptococcus pneumoniae Rx1

73.747

99.054

0.73
  cinA Streptococcus pneumoniae R6

73.747

99.054

0.73
  cinA Streptococcus pneumoniae D39

73.508

99.054

0.728
  cinA Streptococcus mutans UA159

71.158

100

0.712
  cinA Streptococcus suis isolate S10

54.808

98.345

0.539
  cinA Bacillus subtilis subsp. subtilis str. 168

44.893

99.527

0.447

Multiple sequence alignment