Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   INP90_RS03135 Genome accession   NZ_CP063124
Coordinates   639448..640503 (-) Length   351 a.a.
NCBI ID   WP_049369596.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C113_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 634448..645503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP90_RS03115 (INP90_03115) tuf 636394..637578 (+) 1185 WP_049383876.1 elongation factor Tu -
  INP90_RS03120 (INP90_03120) - 637737..638555 (+) 819 WP_197559925.1 Cof-type HAD-IIB family hydrolase -
  INP90_RS03125 (INP90_03125) crcB 638556..638951 (+) 396 WP_197559926.1 fluoride efflux transporter CrcB -
  INP90_RS03130 (INP90_03130) recX 638926..639378 (-) 453 WP_197559927.1 recombination regulator RecX -
  INP90_RS03135 (INP90_03135) recA 639448..640503 (-) 1056 WP_049369596.1 recombinase RecA Machinery gene
  INP90_RS03140 (INP90_03140) - 640640..641482 (-) 843 WP_197559928.1 patatin-like phospholipase family protein -
  INP90_RS03145 (INP90_03145) sxy/tfoX 641709..642377 (+) 669 WP_197559929.1 TfoX/Sxy family DNA transformation protein Regulator

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37546.99 Da        Isoelectric Point: 4.8683

>NTDB_id=493200 INP90_RS03135 WP_049369596.1 639448..640503(-) (recA) [Haemophilus parainfluenzae strain M1C113_1]
MATQEEKQKALAAALGQIEKQFGKGSIMKLGDTQALDVESVSTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAQAQKVGKTCAFIDAEHALDPIYAAKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGEM
GDSHMGLQARLMSQALRKLTGQIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGDEVIG
NETRVKVVKNKLAAPFRQVDFQILYGEGISKAGELIELGVKHKLVEKSGAWYAYNGEKIGQGKANAMKWLNENPAKSDEL
EAKLRAELVANPEQALMADIEQSNDDAESDF

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=493200 INP90_RS03135 WP_049369596.1 639448..640503(-) (recA) [Haemophilus parainfluenzae strain M1C113_1]
ATGGCAACTCAAGAAGAAAAGCAAAAAGCGCTCGCCGCAGCACTTGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCAAT
TATGAAATTGGGCGATACTCAAGCCCTTGATGTAGAATCTGTTTCAACTGGTTCTTTAGGTCTTGATGTTGCCCTTGGTA
TTGGTGGTTTACCAATGGGTCGTATTGTTGAAATTTTTGGACCTGAATCTTCTGGTAAAACAACTTTAACTTTATCTGTT
ATCGCTCAAGCACAAAAAGTCGGTAAAACCTGCGCGTTTATCGATGCTGAGCATGCTCTTGATCCTATTTATGCAGCAAA
ACTTGGTGTTGATGTGAAAGAGCTCTTAGTCTCCCAGCCAGACAACGGTGAACAAGCACTTGAAATTTGTGATGCATTAG
TACGTTCTGGTGCTGTAGATGTCGTCATCGTAGACTCGGTCGCTGCACTCACCCCGAAAGCTGAAATTGAAGGTGAAATG
GGTGATTCACACATGGGTTTACAAGCGCGTTTAATGTCTCAAGCGCTACGTAAATTAACCGGCCAAATCAAAAATGCAAA
CTGTCTCGTTATCTTCATTAACCAAATTCGTATGAAAATTGGTGTCATGTTTGGTAACCCAGAAACCACAACCGGTGGTA
ACGCACTGAAATTCTACTCTTCTGTGCGTTTAGATATCCGTCGCACTGGTTCAGTTAAAGATGGAGATGAAGTCATTGGT
AATGAAACTCGTGTTAAAGTAGTCAAAAACAAATTAGCCGCACCTTTCCGCCAAGTTGATTTCCAAATTCTTTACGGAGA
AGGTATTTCGAAAGCTGGCGAATTAATTGAGCTCGGTGTTAAACACAAACTAGTTGAGAAATCTGGTGCATGGTATGCAT
ACAACGGTGAAAAGATTGGTCAAGGTAAAGCTAACGCAATGAAATGGTTAAACGAAAACCCTGCTAAATCTGATGAACTT
GAAGCGAAGCTTCGTGCTGAATTAGTAGCCAATCCAGAACAGGCATTAATGGCGGACATTGAACAATCTAACGATGACGC
AGAAAGCGATTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

76.522

98.291

0.752
  recA Vibrio cholerae O1 biovar El Tor strain E7946

76.522

98.291

0.752
  recA Glaesserella parasuis strain SC1401

76.453

98.006

0.749
  recA Pseudomonas stutzeri DSM 10701

77.846

92.593

0.721
  recA Acinetobacter baylyi ADP1

70.029

98.86

0.692
  recA Neisseria gonorrhoeae MS11

74.923

92.023

0.689
  recA Neisseria gonorrhoeae MS11

74.923

92.023

0.689
  recA Neisseria gonorrhoeae strain FA1090

74.923

92.023

0.689
  recA Ralstonia pseudosolanacearum GMI1000

73.041

90.883

0.664
  recA Acinetobacter baumannii D1279779

71.166

92.877

0.661
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.985

95.442

0.601
  recA Helicobacter pylori 26695

61.471

96.866

0.595
  recA Helicobacter pylori strain NCTC11637

60.882

96.866

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

66.234

87.749

0.581
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.722

90.313

0.575
  recA Streptococcus pneumoniae TIGR4

56.857

99.715

0.567
  recA Streptococcus pneumoniae Rx1

56.857

99.715

0.567
  recA Streptococcus pneumoniae D39

56.857

99.715

0.567
  recA Streptococcus pneumoniae R6

56.857

99.715

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.55

93.162

0.564
  recA Streptococcus mutans UA159

59.633

93.162

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

60.062

92.023

0.553
  recA Streptococcus mitis NCTC 12261

59.327

93.162

0.553
  recA Streptococcus mitis SK321

59.021

93.162

0.55
  recA Streptococcus pyogenes NZ131

58.537

93.447

0.547
  recA Lactococcus lactis subsp. cremoris KW2

58.462

92.593

0.541