Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   INP90_RS03145 Genome accession   NZ_CP063124
Coordinates   641709..642377 (+) Length   222 a.a.
NCBI ID   WP_197559929.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C113_1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 636709..647377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP90_RS03120 (INP90_03120) - 637737..638555 (+) 819 WP_197559925.1 Cof-type HAD-IIB family hydrolase -
  INP90_RS03125 (INP90_03125) crcB 638556..638951 (+) 396 WP_197559926.1 fluoride efflux transporter CrcB -
  INP90_RS03130 (INP90_03130) recX 638926..639378 (-) 453 WP_197559927.1 recombination regulator RecX -
  INP90_RS03135 (INP90_03135) recA 639448..640503 (-) 1056 WP_049369596.1 recombinase RecA Machinery gene
  INP90_RS03140 (INP90_03140) - 640640..641482 (-) 843 WP_197559928.1 patatin-like phospholipase family protein -
  INP90_RS03145 (INP90_03145) sxy/tfoX 641709..642377 (+) 669 WP_197559929.1 TfoX/Sxy family DNA transformation protein Regulator

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25442.71 Da        Isoelectric Point: 10.2770

>NTDB_id=493201 INP90_RS03145 WP_197559929.1 641709..642377(+) (sxy/tfoX) [Haemophilus parainfluenzae strain M1C113_1]
MKTLIIPNDHISKVCDLLNQLIGDVTSKNLFTGYGLFHKEKDMFAVWANNKVYLRAKDELSIKLQGLGCKPFATNELNKR
FVLSDYYALTESILKDNVLMRTLIILSISQIRKEKLDSALSKIGRIRDLPNLSVKYERALKKVGIDNVNTLRQIGAENAI
VRLKKADIGATEAFYWRLRGALENRNCEFYTEKEKERGLSKLNEILSANGFRRCKRTLKKAE

Nucleotide


Download         Length: 669 bp        

>NTDB_id=493201 INP90_RS03145 WP_197559929.1 641709..642377(+) (sxy/tfoX) [Haemophilus parainfluenzae strain M1C113_1]
ATGAAAACTCTCATAATCCCAAATGATCATATCAGTAAAGTATGTGATTTGTTAAATCAACTTATCGGAGATGTAACAAG
TAAAAATCTATTTACGGGATATGGCTTGTTTCATAAAGAAAAAGATATGTTTGCGGTTTGGGCAAACAATAAGGTTTATT
TACGTGCTAAGGATGAGCTTTCGATAAAATTACAAGGACTTGGCTGTAAACCTTTTGCAACAAATGAACTCAATAAACGC
TTCGTATTATCTGATTATTATGCTTTAACTGAAAGTATCTTGAAAGATAATGTTTTAATGAGAACCTTGATCATTCTTTC
TATTAGTCAAATCAGGAAGGAAAAATTAGATTCTGCACTATCTAAGATTGGGAGAATTCGTGATTTACCGAATTTATCGG
TTAAGTATGAAAGAGCTCTGAAGAAAGTGGGTATTGATAATGTTAATACCTTACGGCAAATAGGCGCTGAAAATGCGATT
GTTCGTTTGAAGAAAGCGGATATTGGGGCAACTGAAGCTTTCTATTGGAGGCTTCGAGGTGCTTTAGAGAATCGTAATTG
TGAGTTTTATACTGAAAAAGAGAAGGAAAGAGGCCTTAGTAAACTTAATGAAATACTTTCTGCAAATGGGTTTAGACGTT
GTAAGCGGACCTTAAAAAAGGCTGAATAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(17-110)

TfoX C-terminal domain (TfoX_C)

(125-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

59.903

93.243

0.559