Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   INP95_RS02085 Genome accession   NZ_CP063117
Coordinates   419581..420636 (+) Length   351 a.a.
NCBI ID   WP_197560802.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C142_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 414581..425636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP95_RS02075 (INP95_02075) sxy/tfoX 417705..418373 (-) 669 WP_111388082.1 TfoX/Sxy family DNA transformation protein Regulator
  INP95_RS02080 (INP95_02080) - 418602..419444 (+) 843 WP_197560801.1 patatin-like phospholipase family protein -
  INP95_RS02085 (INP95_02085) recA 419581..420636 (+) 1056 WP_197560802.1 recombinase RecA Machinery gene
  INP95_RS02090 (INP95_02090) recX 420705..421157 (+) 453 WP_197560803.1 recombination regulator RecX -
  INP95_RS02095 (INP95_02095) crcB 421132..421527 (-) 396 WP_197560804.1 fluoride efflux transporter CrcB -
  INP95_RS02100 (INP95_02100) - 421528..422346 (-) 819 WP_197560805.1 Cof-type HAD-IIB family hydrolase -
  INP95_RS02105 (INP95_02105) tuf 422504..423688 (-) 1185 WP_197544004.1 elongation factor Tu -
  INP95_RS02130 (INP95_02130) coaA 424393..425328 (+) 936 WP_005695046.1 type I pantothenate kinase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37561.02 Da        Isoelectric Point: 4.8683

>NTDB_id=493040 INP95_RS02085 WP_197560802.1 419581..420636(+) (recA) [Haemophilus parainfluenzae strain M1C142_1]
MATQEEKQKALAAALGQIEKQFGKGSIMKLGDTQALDVESVSTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAQAQKVGKTCAFIDAEHALDPIYAAKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGEM
GDSHMGLQARLMSQALRKLTGQIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGDEIIG
NETRVKVVKNKLAAPFRQVDFQILYGEGISKAGELIELGVKHKLVEKSGAWYAYNGEKIGQGKANAMKWLNENPAKSDEL
EAKLRAELVANPEQALMADIEQSNDDAESDF

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=493040 INP95_RS02085 WP_197560802.1 419581..420636(+) (recA) [Haemophilus parainfluenzae strain M1C142_1]
ATGGCAACTCAAGAAGAAAAGCAAAAAGCACTCGCGGCAGCACTTGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCAAT
TATGAAATTGGGCGATACTCAAGCCCTTGATGTTGAATCTGTTTCAACGGGTTCTTTAGGTCTTGATGTCGCTCTTGGTA
TTGGTGGTTTACCAATGGGGCGTATTGTTGAAATTTTTGGACCTGAATCTTCTGGTAAAACAACCTTAACTTTATCTGTT
ATCGCTCAAGCTCAAAAAGTGGGTAAAACTTGTGCGTTTATCGATGCGGAGCATGCACTTGATCCTATTTATGCAGCAAA
ACTTGGCGTTGATGTGAAAGAACTTTTAGTTTCCCAACCTGATAATGGTGAACAAGCACTTGAAATTTGTGATGCATTAG
TTCGTTCTGGTGCCGTAGATGTGGTCATTGTGGACTCTGTTGCGGCTCTCACTCCGAAAGCTGAAATTGAAGGCGAAATG
GGTGATTCACACATGGGTTTACAAGCGCGTTTAATGTCTCAAGCACTACGTAAATTAACTGGTCAAATCAAAAATGCAAA
CTGCCTTGTTATCTTCATTAACCAAATTCGCATGAAAATTGGTGTCATGTTTGGTAACCCTGAAACCACAACTGGTGGTA
ACGCGCTAAAATTCTACTCTTCTGTGCGTTTAGATATCCGTCGTACTGGTTCAGTTAAAGATGGAGATGAAATCATTGGT
AACGAAACTCGTGTTAAAGTGGTTAAAAACAAATTAGCCGCACCTTTCCGTCAAGTGGATTTCCAAATTCTTTACGGAGA
AGGGATTTCCAAAGCTGGAGAATTAATTGAACTTGGTGTTAAACACAAACTTGTTGAAAAATCCGGTGCATGGTATGCAT
ATAACGGTGAAAAAATTGGTCAAGGTAAAGCTAATGCGATGAAATGGCTAAATGAAAACCCTGCAAAATCAGACGAACTT
GAAGCGAAACTTCGTGCTGAATTAGTCGCTAACCCAGAACAAGCATTAATGGCTGATATTGAACAATCTAATGATGATGC
AGAAAGCGATTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

76.744

98.006

0.752
  recA Vibrio cholerae strain A1552

76.232

98.291

0.749
  recA Vibrio cholerae O1 biovar El Tor strain E7946

76.232

98.291

0.749
  recA Pseudomonas stutzeri DSM 10701

77.538

92.593

0.718
  recA Acinetobacter baylyi ADP1

70.317

98.86

0.695
  recA Neisseria gonorrhoeae MS11

74.613

92.023

0.687
  recA Neisseria gonorrhoeae MS11

74.613

92.023

0.687
  recA Neisseria gonorrhoeae strain FA1090

74.613

92.023

0.687
  recA Acinetobacter baumannii D1279779

71.472

92.877

0.664
  recA Ralstonia pseudosolanacearum GMI1000

72.727

90.883

0.661
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.687

95.442

0.598
  recA Helicobacter pylori 26695

61.471

96.866

0.595
  recA Helicobacter pylori strain NCTC11637

60.882

96.866

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

65.909

87.749

0.578
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.722

90.313

0.575
  recA Streptococcus pneumoniae TIGR4

56.857

99.715

0.567
  recA Streptococcus pneumoniae Rx1

56.857

99.715

0.567
  recA Streptococcus pneumoniae D39

56.857

99.715

0.567
  recA Streptococcus pneumoniae R6

56.857

99.715

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.55

93.162

0.564
  recA Streptococcus mutans UA159

59.633

93.162

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

60.062

92.023

0.553
  recA Streptococcus mitis NCTC 12261

59.327

93.162

0.553
  recA Streptococcus mitis SK321

59.021

93.162

0.55
  recA Streptococcus pyogenes NZ131

58.537

93.447

0.547
  recA Lactococcus lactis subsp. cremoris KW2

58.462

92.593

0.541