Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   INP95_RS02075 Genome accession   NZ_CP063117
Coordinates   417705..418373 (-) Length   222 a.a.
NCBI ID   WP_111388082.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C142_1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 412705..423373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP95_RS02075 (INP95_02075) sxy/tfoX 417705..418373 (-) 669 WP_111388082.1 TfoX/Sxy family DNA transformation protein Regulator
  INP95_RS02080 (INP95_02080) - 418602..419444 (+) 843 WP_197560801.1 patatin-like phospholipase family protein -
  INP95_RS02085 (INP95_02085) recA 419581..420636 (+) 1056 WP_197560802.1 recombinase RecA Machinery gene
  INP95_RS02090 (INP95_02090) recX 420705..421157 (+) 453 WP_197560803.1 recombination regulator RecX -
  INP95_RS02095 (INP95_02095) crcB 421132..421527 (-) 396 WP_197560804.1 fluoride efflux transporter CrcB -
  INP95_RS02100 (INP95_02100) - 421528..422346 (-) 819 WP_197560805.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25464.80 Da        Isoelectric Point: 10.3912

>NTDB_id=493039 INP95_RS02075 WP_111388082.1 417705..418373(-) (sxy/tfoX) [Haemophilus parainfluenzae strain M1C142_1]
MKTLIIPNDHISKVCNLLNQLIGDVTSKNLFTGYGLFHKEKDMFAVWTNNKIYLRAKHELSIKLKGLGCKPFATNELNKR
FVLSDYYALTESILKDNALMRNLLILSISQIRKEKLDSALSKIGRIRDLPNLSVKYERALKKVGIDSVDILRQIGAENAI
VRLKKADIGATEAFYWRLRGALDNRNCEFYTEKEKERGLSKLNEILSANGFRRCKRTLKKAE

Nucleotide


Download         Length: 669 bp        

>NTDB_id=493039 INP95_RS02075 WP_111388082.1 417705..418373(-) (sxy/tfoX) [Haemophilus parainfluenzae strain M1C142_1]
ATGAAAACTCTCATAATCCCAAATGATCATATCAGTAAAGTATGTAATTTGTTAAATCAACTCATTGGAGATGTGACAAG
TAAAAATCTATTTACGGGATATGGCCTGTTTCATAAAGAGAAAGATATGTTTGCTGTTTGGACAAACAATAAGATTTACT
TGCGTGCAAAACATGAGCTTTCGATAAAGCTAAAAGGATTAGGATGTAAACCTTTTGCAACAAATGAACTCAATAAACGC
TTTGTGCTATCTGATTATTATGCTTTAACTGAAAGTATTTTAAAAGATAATGCTTTAATGAGAAACTTGCTTATTCTTTC
TATTAGTCAAATAAGGAAGGAGAAACTTGATTCCGCCCTCTCTAAGATTGGACGGATTCGTGATTTACCGAATTTATCGG
TTAAATATGAACGAGCATTAAAGAAAGTCGGCATTGATAGTGTCGATATTTTACGACAAATAGGTGCTGAAAATGCGATT
GTTCGTTTGAAGAAAGCGGATATAGGGGCAACAGAGGCTTTTTATTGGCGGCTTCGAGGTGCTTTAGATAACCGTAATTG
CGAGTTTTATACTGAAAAAGAGAAGGAAAGAGGCCTAAGTAAACTTAATGAAATACTTTCTGCAAATGGGTTTAGACGTT
GTAAGCGGACCTTAAAAAAGGCTGAATAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(17-110)

TfoX C-terminal domain (TfoX_C)

(125-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

58.937

93.243

0.55