Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   INP96_RS02095 Genome accession   NZ_CP063116
Coordinates   420611..421666 (+) Length   351 a.a.
NCBI ID   WP_197556085.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C146_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 415611..426666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP96_RS02085 (INP96_02085) sxy/tfoX 418735..419403 (-) 669 WP_197556083.1 TfoX/Sxy family DNA transformation protein Regulator
  INP96_RS02090 (INP96_02090) - 419632..420474 (+) 843 WP_197556084.1 patatin-like phospholipase family protein -
  INP96_RS02095 (INP96_02095) recA 420611..421666 (+) 1056 WP_197556085.1 recombinase RecA Machinery gene
  INP96_RS02100 (INP96_02100) recX 421736..422188 (+) 453 WP_197556086.1 recombination regulator RecX -
  INP96_RS02105 (INP96_02105) crcB 422163..422558 (-) 396 WP_111316089.1 fluoride efflux transporter CrcB -
  INP96_RS02110 (INP96_02110) - 422559..423377 (-) 819 WP_111316088.1 Cof-type HAD-IIB family hydrolase -
  INP96_RS02115 (INP96_02115) tuf 423535..424719 (-) 1185 WP_049383876.1 elongation factor Tu -
  INP96_RS02140 (INP96_02140) coaA 425423..426358 (+) 936 WP_005695046.1 type I pantothenate kinase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37598.08 Da        Isoelectric Point: 4.9529

>NTDB_id=493009 INP96_RS02095 WP_197556085.1 420611..421666(+) (recA) [Haemophilus parainfluenzae strain M1C146_1]
MATQEEKQKALAAALGQIEKQFGKGSIMKLGDTQALDVESVSTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAQAQKVGKTCAFIDAEHALDPIYAAKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGEM
GDSHMGLQARLMSQALRKLTGQIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGDEVIG
NETRVKVVKNKLAAPFRQVDFQILYGEGISKAGELIELGVKHKLVEKSGAWYAYNGEKIGQGKANAMKWLHENPAKSDEL
EAKLRAELVANPEQALMADIEQSNDDVESDF

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=493009 INP96_RS02095 WP_197556085.1 420611..421666(+) (recA) [Haemophilus parainfluenzae strain M1C146_1]
ATGGCAACTCAAGAAGAAAAGCAAAAAGCGCTCGCCGCAGCACTTGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCAAT
TATGAAATTGGGTGATACTCAAGCCCTTGATGTTGAATCTGTTTCAACTGGTTCTTTAGGTCTTGATGTCGCTCTTGGTA
TTGGTGGTTTACCAATGGGTCGTATTGTTGAAATATTTGGACCGGAATCTTCTGGTAAAACAACCTTAACCTTATCTGTT
ATCGCTCAAGCGCAAAAAGTCGGTAAAACCTGCGCGTTTATCGATGCGGAGCATGCTCTTGATCCTATTTATGCAGCAAA
ACTTGGTGTTGATGTAAAAGAGCTCTTGGTCTCCCAGCCAGACAACGGTGAACAAGCACTTGAAATTTGTGATGCATTAG
TACGTTCTGGTGCTGTAGATGTCGTCATCGTAGACTCGGTTGCTGCACTCACCCCGAAAGCTGAAATTGAAGGTGAAATG
GGTGATTCACACATGGGTTTACAAGCGCGTTTAATGTCTCAAGCGCTACGTAAATTAACCGGCCAAATCAAAAATGCAAA
CTGTCTTGTTATCTTCATTAACCAAATTCGTATGAAAATTGGTGTCATGTTTGGTAACCCAGAAACCACAACCGGTGGTA
ACGCACTGAAATTCTACTCTTCTGTTCGTTTAGATATCCGTCGCACTGGTTCAGTTAAAGATGGAGATGAAGTCATTGGT
AATGAAACTCGTGTTAAAGTAGTCAAAAACAAATTAGCTGCACCTTTCCGCCAAGTTGATTTCCAAATTCTTTACGGAGA
AGGTATCTCTAAAGCAGGCGAATTAATTGAACTTGGTGTTAAACACAAACTTGTTGAAAAATCCGGTGCGTGGTATGCAT
ATAACGGTGAAAAAATTGGTCAAGGTAAAGCCAATGCGATGAAGTGGTTACATGAAAATCCTGCGAAATCAGATGAACTT
GAAGCGAAGCTTCGTGCTGAATTAGTCGCTAACCCAGAACAAGCATTAATGGCTGATATTGAACAATCTAATGATGACGT
AGAAAGCGATTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

76.879

98.575

0.758
  recA Vibrio cholerae strain A1552

76.812

98.291

0.755
  recA Vibrio cholerae O1 biovar El Tor strain E7946

76.812

98.291

0.755
  recA Pseudomonas stutzeri DSM 10701

77.846

92.593

0.721
  recA Acinetobacter baylyi ADP1

70.029

98.86

0.692
  recA Neisseria gonorrhoeae MS11

74.923

92.023

0.689
  recA Neisseria gonorrhoeae MS11

74.923

92.023

0.689
  recA Neisseria gonorrhoeae strain FA1090

74.923

92.023

0.689
  recA Ralstonia pseudosolanacearum GMI1000

73.041

90.883

0.664
  recA Acinetobacter baumannii D1279779

71.166

92.877

0.661
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.985

95.442

0.601
  recA Helicobacter pylori 26695

61.471

96.866

0.595
  recA Helicobacter pylori strain NCTC11637

60.882

96.866

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

66.234

87.749

0.581
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.722

90.313

0.575
  recA Streptococcus mitis NCTC 12261

55.742

100

0.567
  recA Streptococcus pneumoniae TIGR4

57.514

98.575

0.567
  recA Streptococcus pneumoniae Rx1

57.514

98.575

0.567
  recA Streptococcus pneumoniae D39

57.514

98.575

0.567
  recA Streptococcus pneumoniae R6

57.514

98.575

0.567
  recA Streptococcus mitis SK321

55.462

100

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.55

93.162

0.564
  recA Streptococcus mutans UA159

59.633

93.162

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

60.062

92.023

0.553
  recA Streptococcus pyogenes NZ131

58.537

93.447

0.547
  recA Lactococcus lactis subsp. cremoris KW2

58.462

92.593

0.541