Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   INP96_RS02085 Genome accession   NZ_CP063116
Coordinates   418735..419403 (-) Length   222 a.a.
NCBI ID   WP_197556083.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C146_1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 413735..424403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP96_RS02085 (INP96_02085) sxy/tfoX 418735..419403 (-) 669 WP_197556083.1 TfoX/Sxy family DNA transformation protein Regulator
  INP96_RS02090 (INP96_02090) - 419632..420474 (+) 843 WP_197556084.1 patatin-like phospholipase family protein -
  INP96_RS02095 (INP96_02095) recA 420611..421666 (+) 1056 WP_197556085.1 recombinase RecA Machinery gene
  INP96_RS02100 (INP96_02100) recX 421736..422188 (+) 453 WP_197556086.1 recombination regulator RecX -
  INP96_RS02105 (INP96_02105) crcB 422163..422558 (-) 396 WP_111316089.1 fluoride efflux transporter CrcB -
  INP96_RS02110 (INP96_02110) - 422559..423377 (-) 819 WP_111316088.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25472.78 Da        Isoelectric Point: 10.2879

>NTDB_id=493008 INP96_RS02085 WP_197556083.1 418735..419403(-) (sxy/tfoX) [Haemophilus parainfluenzae strain M1C146_1]
MKTLIIPNDHISKVCDLLNQLIGDVTSKNLFTGYGLYHKEKDMFAVWANNKVYLRAKDELSIKLKGLGCKPFATNELNKR
FVLSDYYALTESILKDNVLMRTLIILSITQIRKEKLDSALSKIGRIRDLPNLSVKYERALKKVGIDNVNTLRQIGAENAI
VRLKKADIGATEAFYWRLRGALENRNCEFYTEKEKERGLSKLNEILSANGFRRCKRTLKKAE

Nucleotide


Download         Length: 669 bp        

>NTDB_id=493008 INP96_RS02085 WP_197556083.1 418735..419403(-) (sxy/tfoX) [Haemophilus parainfluenzae strain M1C146_1]
ATGAAAACTCTCATAATCCCAAATGATCATATCAGTAAAGTATGTGATTTGTTAAATCAACTTATCGGAGATGTAACAAG
TAAAAATTTATTTACGGGATATGGCTTATATCATAAAGAGAAAGATATGTTTGCGGTTTGGGCAAACAATAAGGTTTACT
TACGTGCTAAGGATGAGCTTTCGATAAAATTAAAAGGACTTGGCTGTAAACCTTTTGCAACAAATGAACTCAATAAACGC
TTCGTATTATCTGATTATTATGCTTTAACTGAAAGTATCTTGAAAGATAATGTTTTAATGAGAACCTTGATCATTCTTTC
TATTACCCAAATCAGGAAGGAAAAATTAGATTCTGCACTATCTAAGATTGGGAGAATTCGTGATTTACCGAATTTATCGG
TTAAGTATGAAAGAGCGCTGAAGAAAGTGGGTATTGATAATGTTAATACCCTACGGCAAATAGGCGCTGAAAATGCGATT
GTTCGTTTGAAGAAAGCGGATATTGGGGCTACTGAGGCTTTTTATTGGCGACTTCGAGGTGCTTTAGAGAATCGTAATTG
TGAGTTTTATACTGAAAAAGAGAAGGAAAGAGGCCTTAGTAAACTTAATGAAATACTTTCTGCAAATGGGTTTAGACGTT
GTAAGCGAACCTTAAAAAAGGCCGAATAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(125-197)

TfoX N-terminal domain (TfoX_N)

(17-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

59.42

93.243

0.554