Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   INP98_RS02215 Genome accession   NZ_CP063112
Coordinates   438454..439509 (+) Length   351 a.a.
NCBI ID   WP_065285491.1    Uniprot ID   A0A1B8T5Z4
Organism   Haemophilus parainfluenzae strain M1C149_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 433454..444509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP98_RS02205 (INP98_02205) sxy/tfoX 436578..437246 (-) 669 WP_197570212.1 TfoX/Sxy family DNA transformation protein Regulator
  INP98_RS02210 (INP98_02210) - 437475..438317 (+) 843 WP_197570213.1 patatin-like phospholipase family protein -
  INP98_RS02215 (INP98_02215) recA 438454..439509 (+) 1056 WP_065285491.1 recombinase RecA Machinery gene
  INP98_RS02220 (INP98_02220) recX 439579..440031 (+) 453 WP_197570214.1 recombination regulator RecX -
  INP98_RS02225 (INP98_02225) crcB 440006..440401 (-) 396 WP_014064543.1 fluoride efflux transporter CrcB -
  INP98_RS02230 (INP98_02230) - 440402..441220 (-) 819 WP_197570215.1 Cof-type HAD-IIB family hydrolase -
  INP98_RS02235 (INP98_02235) tuf 441377..442561 (-) 1185 WP_197544004.1 elongation factor Tu -
  INP98_RS02260 (INP98_02260) coaA 443264..444199 (+) 936 WP_197570216.1 type I pantothenate kinase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37577.01 Da        Isoelectric Point: 4.8683

>NTDB_id=492944 INP98_RS02215 WP_065285491.1 438454..439509(+) (recA) [Haemophilus parainfluenzae strain M1C149_1]
MATQEEKQKALAAALGQIEKQFGKGSIMKLGDTQALDVESVSTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAQAQKVGKTCAFIDAEHALDPIYAAKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGEM
GDSHMGLQARLMSQALRKLTGQIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGDEVIG
NETRVKVVKNKLAAPFRQVDFQILYGEGISKAGELIELGVKHKLVEKSGAWYAYNGEKIGQGKANAMKWLNENPAKSDEL
EAKLRAELVANPEQALMADIEQSNDDTESDF

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=492944 INP98_RS02215 WP_065285491.1 438454..439509(+) (recA) [Haemophilus parainfluenzae strain M1C149_1]
ATGGCAACTCAAGAAGAAAAGCAAAAAGCGCTCGCCGCAGCACTTGGTCAAATTGAAAAACAATTCGGTAAAGGTTCAAT
TATGAAATTAGGGGATACTCAAGCCCTTGACGTTGAATCTGTTTCAACTGGTTCTTTAGGTCTTGATGTCGCGCTTGGTA
TTGGTGGTTTACCAATGGGTCGTATTGTTGAAATTTTTGGACCTGAATCTTCTGGTAAAACAACCTTAACTTTATCTGTT
ATTGCTCAAGCACAAAAAGTAGGTAAAACCTGTGCGTTTATTGATGCAGAGCATGCTCTTGATCCTATTTATGCAGCAAA
ACTTGGCGTTGATGTAAAAGAACTTTTAGTTTCCCAACCTGACAATGGTGAACAAGCACTTGAAATTTGTGATGCATTAG
TACGTTCTGGTGCTGTAGATGTCGTCATTGTGGACTCTGTTGCTGCACTCACCCCGAAAGCTGAAATTGAAGGTGAAATG
GGGGATTCGCACATGGGCTTACAAGCGCGTTTAATGTCTCAAGCGCTACGTAAATTAACTGGTCAAATCAAAAATGCAAA
CTGTCTTGTTATCTTCATTAACCAAATTCGTATGAAAATTGGTGTCATGTTTGGTAATCCAGAAACTACAACCGGTGGTA
ACGCATTAAAATTCTATTCTTCTGTGCGTTTAGATATTCGCCGTACAGGTTCAGTTAAAGATGGAGATGAAGTCATTGGT
AATGAAACTCGTGTTAAAGTAGTTAAAAACAAATTAGCAGCACCTTTCCGCCAAGTTGATTTCCAAATTCTTTACGGAGA
AGGTATTTCGAAAGCGGGCGAATTAATTGAGCTCGGTGTTAAACATAAACTTGTTGAGAAATCTGGTGCATGGTATGCAT
ACAATGGTGAAAAGATTGGTCAAGGTAAAGCCAATGCAATGAAATGGTTAAACGAAAACCCTGCTAAATCTGATGAACTT
GAAGCGAAGCTTCGTGCTGAATTAGTAGCCAATCCAGAACAAGCATTAATGGCTGACATTGAACAATCTAACGATGACAC
AGAAAGCGATTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B8T5Z4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

76.522

98.291

0.752
  recA Vibrio cholerae O1 biovar El Tor strain E7946

76.522

98.291

0.752
  recA Glaesserella parasuis strain SC1401

76.453

98.006

0.749
  recA Pseudomonas stutzeri DSM 10701

77.846

92.593

0.721
  recA Neisseria gonorrhoeae strain FA1090

74.923

92.023

0.689
  recA Neisseria gonorrhoeae MS11

74.923

92.023

0.689
  recA Neisseria gonorrhoeae MS11

74.923

92.023

0.689
  recA Acinetobacter baylyi ADP1

69.653

98.575

0.687
  recA Ralstonia pseudosolanacearum GMI1000

73.041

90.883

0.664
  recA Acinetobacter baumannii D1279779

71.385

92.593

0.661
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.985

95.442

0.601
  recA Helicobacter pylori 26695

61.471

96.866

0.595
  recA Helicobacter pylori strain NCTC11637

60.882

96.866

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

66.234

87.749

0.581
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.722

90.313

0.575
  recA Streptococcus pneumoniae TIGR4

56.857

99.715

0.567
  recA Streptococcus pneumoniae Rx1

56.857

99.715

0.567
  recA Streptococcus pneumoniae D39

56.857

99.715

0.567
  recA Streptococcus pneumoniae R6

56.857

99.715

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.55

93.162

0.564
  recA Streptococcus mutans UA159

59.633

93.162

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

60.062

92.023

0.553
  recA Streptococcus mitis NCTC 12261

59.327

93.162

0.553
  recA Streptococcus mitis SK321

59.021

93.162

0.55
  recA Streptococcus pyogenes NZ131

58.537

93.447

0.547
  recA Lactococcus lactis subsp. cremoris KW2

58.462

92.593

0.541