Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   INP98_RS02205 Genome accession   NZ_CP063112
Coordinates   436578..437246 (-) Length   222 a.a.
NCBI ID   WP_197570212.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C149_1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 431578..442246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP98_RS02205 (INP98_02205) sxy/tfoX 436578..437246 (-) 669 WP_197570212.1 TfoX/Sxy family DNA transformation protein Regulator
  INP98_RS02210 (INP98_02210) - 437475..438317 (+) 843 WP_197570213.1 patatin-like phospholipase family protein -
  INP98_RS02215 (INP98_02215) recA 438454..439509 (+) 1056 WP_065285491.1 recombinase RecA Machinery gene
  INP98_RS02220 (INP98_02220) recX 439579..440031 (+) 453 WP_197570214.1 recombination regulator RecX -
  INP98_RS02225 (INP98_02225) crcB 440006..440401 (-) 396 WP_014064543.1 fluoride efflux transporter CrcB -
  INP98_RS02230 (INP98_02230) - 440402..441220 (-) 819 WP_197570215.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25581.00 Da        Isoelectric Point: 10.3912

>NTDB_id=492943 INP98_RS02205 WP_197570212.1 436578..437246(-) (sxy/tfoX) [Haemophilus parainfluenzae strain M1C149_1]
MKTLIIPNDHISKVCNLLNQLIGDMTSKNLFTGYGLFHKEKDMFAVWANNKIYLRAKHELSIKLKGLGCKPFATNELNKR
FVLSDYYALTESILKDNALMRNLLILSISQIRKEKLDSALSKIGRIRDLPNLSVKYERALKKVGIDNVDILRQIGAENAI
VRLKKADIGATEAFYWRLRGALENRNCEFYTEKEKERGLNKLNEMLSANGFRRCKRTLKKVE

Nucleotide


Download         Length: 669 bp        

>NTDB_id=492943 INP98_RS02205 WP_197570212.1 436578..437246(-) (sxy/tfoX) [Haemophilus parainfluenzae strain M1C149_1]
ATGAAAACTCTCATAATCCCAAATGATCATATCAGTAAAGTATGTAATTTGTTAAATCAACTCATTGGAGATATGACAAG
TAAAAATCTATTTACGGGATATGGCTTGTTTCATAAAGAGAAAGATATGTTTGCTGTTTGGGCAAACAATAAGATTTACT
TGCGTGCAAAACATGAGCTTTCGATAAAGCTAAAAGGATTAGGATGTAAGCCTTTTGCAACAAATGAACTCAATAAACGC
TTTGTGCTATCTGATTATTATGCTTTAACTGAAAGTATTTTGAAAGATAATGCTTTAATGAGAAATTTGCTTATTCTTTC
TATTAGTCAAATCAGGAAGGAAAAATTAGATTCTGCATTATCTAAGATTGGACGAATTCGTGATTTACCAAATTTATCTG
TAAAGTATGAAAGAGCGCTAAAGAAAGTAGGAATAGATAATGTCGATATCTTACGGCAAATAGGCGCTGAAAATGCAATT
GTTCGTTTGAAGAAAGCGGATATAGGGGCTACGGAGGCTTTTTATTGGCGGCTTCGAGGTGCTTTAGAGAATCGTAATTG
CGAGTTTTATACTGAAAAAGAGAAGGAAAGAGGCCTGAATAAACTTAATGAAATGCTTTCTGCAAATGGGTTTAGACGTT
GTAAGCGGACCTTAAAAAAGGTTGAATAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(125-198)

TfoX N-terminal domain (TfoX_N)

(17-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

58.937

93.243

0.55