Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   INP99_RS02970 Genome accession   NZ_CP063111
Coordinates   624064..625119 (-) Length   351 a.a.
NCBI ID   WP_197542657.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C152_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 619064..630119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP99_RS02925 (INP99_02920) coaA 619372..620307 (-) 936 WP_005695046.1 type I pantothenate kinase -
  INP99_RS02950 (INP99_02945) tuf 621011..622195 (+) 1185 WP_049383876.1 elongation factor Tu -
  INP99_RS02955 (INP99_02950) - 622353..623171 (+) 819 WP_197542654.1 Cof-type HAD-IIB family hydrolase -
  INP99_RS02960 (INP99_02955) crcB 623172..623567 (+) 396 WP_197542655.1 fluoride efflux transporter CrcB -
  INP99_RS02965 (INP99_02960) recX 623542..623994 (-) 453 WP_197542656.1 recombination regulator RecX -
  INP99_RS02970 (INP99_02965) recA 624064..625119 (-) 1056 WP_197542657.1 recombinase RecA Machinery gene
  INP99_RS02975 (INP99_02970) - 625256..626098 (-) 843 WP_197542658.1 patatin-like phospholipase family protein -
  INP99_RS02980 (INP99_02975) sxy/tfoX 626325..626993 (+) 669 WP_197542659.1 TfoX/Sxy family DNA transformation protein Regulator

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37614.08 Da        Isoelectric Point: 4.9529

>NTDB_id=492918 INP99_RS02970 WP_197542657.1 624064..625119(-) (recA) [Haemophilus parainfluenzae strain M1C152_1]
MATQEEKQKALSAALGQIEKQFGKGSIMKLGDTQALDVESVSTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAQAQKVGKTCAFIDAEHALDPIYAAKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGEM
GDSHMGLQARLMSQALRKLTGQIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGDEVIG
NETRVKVVKNKLAAPFRQVDFQILYGEGISKAGELIELGVKHKLVEKSGAWYAYNGEKIGQGKANAMKWLHENPAKSDEL
EAKLRAELVANPEQALMADIEQSNDDVESDF

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=492918 INP99_RS02970 WP_197542657.1 624064..625119(-) (recA) [Haemophilus parainfluenzae strain M1C152_1]
ATGGCAACTCAAGAAGAAAAGCAAAAAGCACTCTCAGCAGCACTTGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCAAT
TATGAAATTGGGTGATACTCAAGCCCTTGACGTTGAATCTGTTTCAACTGGTTCTTTAGGTCTTGATGTCGCTCTTGGTA
TTGGTGGTTTACCAATGGGTCGCATTGTTGAAATTTTTGGACCGGAATCTTCTGGTAAAACAACCTTAACTTTATCTGTT
ATCGCTCAAGCACAAAAAGTAGGTAAAACCTGTGCGTTTATCGATGCGGAGCATGCACTTGATCCTATTTATGCAGCAAA
ACTTGGCGTTGATGTTAAAGAGCTCTTAGTCTCCCAGCCAGACAACGGTGAACAAGCACTTGAAATTTGTGATGCATTAG
TACGTTCTGGTGCTGTAGATGTCGTCATCGTAGACTCAGTTGCTGCACTCACCCCGAAAGCTGAAATTGAAGGTGAAATG
GGTGATTCACACATGGGTTTACAAGCGCGTTTAATGTCCCAAGCACTACGTAAATTAACCGGTCAAATCAAAAATGCAAA
CTGTCTCGTTATCTTCATTAATCAAATTCGTATGAAAATTGGTGTCATGTTTGGTAACCCTGAAACTACAACTGGTGGTA
ACGCACTAAAATTCTACTCTTCTGTTCGTTTAGATATCCGTCGTACTGGTTCAGTTAAAGATGGAGATGAGGTCATTGGT
AACGAAACTCGTGTTAAAGTAGTTAAAAACAAATTAGCCGCACCTTTCCGCCAAGTAGATTTCCAAATTCTTTATGGAGA
AGGTATCTCTAAAGCAGGCGAATTAATTGAACTTGGTGTTAAACACAAACTTGTTGAAAAATCCGGTGCGTGGTATGCAT
ATAACGGTGAAAAAATTGGTCAAGGTAAAGCCAATGCGATGAAGTGGTTACATGAAAATCCTGCGAAATCAGATGAACTT
GAAGCGAAGCTTCGTGCTGAATTAGTCGCTAACCCAGAACAAGCATTAATGGCTGATATTGAACAATCTAATGATGACGT
AGAAAGCGATTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

76.879

98.575

0.758
  recA Vibrio cholerae strain A1552

76.522

98.291

0.752
  recA Vibrio cholerae O1 biovar El Tor strain E7946

76.522

98.291

0.752
  recA Pseudomonas stutzeri DSM 10701

77.538

92.593

0.718
  recA Acinetobacter baylyi ADP1

70.029

98.86

0.692
  recA Neisseria gonorrhoeae MS11

74.613

92.023

0.687
  recA Neisseria gonorrhoeae MS11

74.613

92.023

0.687
  recA Neisseria gonorrhoeae strain FA1090

74.613

92.023

0.687
  recA Ralstonia pseudosolanacearum GMI1000

73.041

90.883

0.664
  recA Acinetobacter baumannii D1279779

71.385

92.593

0.661
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.687

95.442

0.598
  recA Helicobacter pylori 26695

61.765

96.866

0.598
  recA Helicobacter pylori strain NCTC11637

61.176

96.866

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

66.234

87.749

0.581
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.722

90.313

0.575
  recA Streptococcus mitis NCTC 12261

55.742

100

0.567
  recA Streptococcus pneumoniae TIGR4

57.514

98.575

0.567
  recA Streptococcus pneumoniae Rx1

57.514

98.575

0.567
  recA Streptococcus pneumoniae D39

57.514

98.575

0.567
  recA Streptococcus pneumoniae R6

57.514

98.575

0.567
  recA Streptococcus mitis SK321

55.462

100

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.55

93.162

0.564
  recA Streptococcus mutans UA159

59.633

93.162

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

60.062

92.023

0.553
  recA Streptococcus pyogenes NZ131

58.537

93.447

0.547
  recA Lactococcus lactis subsp. cremoris KW2

58.154

92.593

0.538