Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   INP99_RS02980 Genome accession   NZ_CP063111
Coordinates   626325..626993 (+) Length   222 a.a.
NCBI ID   WP_197542659.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C152_1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 621325..631993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP99_RS02955 (INP99_02950) - 622353..623171 (+) 819 WP_197542654.1 Cof-type HAD-IIB family hydrolase -
  INP99_RS02960 (INP99_02955) crcB 623172..623567 (+) 396 WP_197542655.1 fluoride efflux transporter CrcB -
  INP99_RS02965 (INP99_02960) recX 623542..623994 (-) 453 WP_197542656.1 recombination regulator RecX -
  INP99_RS02970 (INP99_02965) recA 624064..625119 (-) 1056 WP_197542657.1 recombinase RecA Machinery gene
  INP99_RS02975 (INP99_02970) - 625256..626098 (-) 843 WP_197542658.1 patatin-like phospholipase family protein -
  INP99_RS02980 (INP99_02975) sxy/tfoX 626325..626993 (+) 669 WP_197542659.1 TfoX/Sxy family DNA transformation protein Regulator

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25547.98 Da        Isoelectric Point: 10.3278

>NTDB_id=492919 INP99_RS02980 WP_197542659.1 626325..626993(+) (sxy/tfoX) [Haemophilus parainfluenzae strain M1C152_1]
MKTLIIPNDHISKVCDLLNQLIGDVTSKNLFTGYGLFHKEKDMFAVWANNKVYLRAKHELSIKLKGLGCKPFTTNELNKR
FVLSDYYALTESILKDNVLMRTLIILSITQIRKEKLDSALSKIGRIRDLPNLSVKYERALKKVGIDNVDILRQIGAENAI
VRLKKADIGATEAFYWRLRGALENRNCEFYTEKEKERGLIKLNEILSANGFRRCKRTLKKAE

Nucleotide


Download         Length: 669 bp        

>NTDB_id=492919 INP99_RS02980 WP_197542659.1 626325..626993(+) (sxy/tfoX) [Haemophilus parainfluenzae strain M1C152_1]
ATGAAAACTCTCATAATCCCAAATGATCATATCAGTAAAGTATGTGATTTGTTAAATCAACTTATCGGAGATGTAACAAG
TAAAAATCTATTTACGGGATATGGCTTGTTTCATAAAGAAAAAGATATGTTTGCTGTTTGGGCAAACAATAAGGTTTACC
TACGCGCCAAGCATGAGCTTTCCATAAAGCTAAAAGGACTTGGATGTAAACCTTTTACAACAAATGAACTCAATAAGCGC
TTCGTATTATCTGATTATTATGCTTTAACTGAAAGCATCTTGAAAGATAATGTCTTAATGAGAACCTTGATCATTCTTTC
AATTACTCAAATAAGGAAGGAAAAACTCGATTCTGCACTCTCTAAGATTGGACGGATCCGTGACTTACCGAATTTATCGG
TTAAGTATGAACGAGCATTAAAGAAAGTTGGTATTGATAATGTCGATATTTTACGACAAATAGGTGCTGAAAATGCAATT
GTTCGTTTGAAGAAAGCGGACATTGGTGCAACAGAAGCTTTTTATTGGCGACTTCGTGGTGCTTTAGAAAATCGTAATTG
TGAGTTTTATACTGAGAAAGAAAAGGAGAGAGGGCTTATTAAACTTAATGAAATACTTTCTGCAAATGGATTTAGGCGCT
GTAAACGGACTTTAAAAAAGGCTGAATAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(125-197)

TfoX N-terminal domain (TfoX_N)

(17-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

60.386

93.243

0.563