Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IE339_RS16755 Genome accession   NZ_CP061868
Coordinates   3177963..3178997 (-) Length   344 a.a.
NCBI ID   WP_277933916.1    Uniprot ID   -
Organism   Priestia koreensis strain FS-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3172963..3183997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE339_RS16735 (IE339_16720) - 3173492..3174412 (-) 921 WP_242169381.1 dipeptidase -
  IE339_RS16740 (IE339_16725) spoVS 3174505..3174765 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  IE339_RS16745 (IE339_16730) - 3175005..3175802 (-) 798 WP_242169382.1 TIGR00282 family metallophosphoesterase -
  IE339_RS16750 (IE339_16735) rny 3175919..3177481 (-) 1563 WP_053401622.1 ribonuclease Y -
  IE339_RS16755 (IE339_16740) recA 3177963..3178997 (-) 1035 WP_277933916.1 recombinase RecA Machinery gene
  IE339_RS16760 (IE339_16745) cinA 3179251..3180489 (-) 1239 WP_242169383.1 competence/damage-inducible protein A Machinery gene
  IE339_RS16765 (IE339_16750) pgsA 3180511..3181095 (-) 585 WP_242169384.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IE339_RS16770 (IE339_16755) - 3181291..3182271 (-) 981 WP_242169385.1 RodZ domain-containing protein -
  IE339_RS16775 (IE339_16760) - 3182284..3183075 (-) 792 WP_053401627.1 DUF3388 domain-containing protein -
  IE339_RS16780 (IE339_16765) - 3183354..3183653 (-) 300 WP_242169386.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37577.52 Da        Isoelectric Point: 4.8439

>NTDB_id=485375 IE339_RS16755 WP_277933916.1 3177963..3178997(-) (recA) [Priestia koreensis strain FS-1]
MNDRQAALDMALKQIEKQFGKGSIMKLGEQTDRKISTASSGSLALDIALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQQNGGQAAFIDAEHALDPDYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDILVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAVFINQIREKVGIMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVVGNKT
KIKVVKNKVAPPFRAAEVDIMYGEGISKEGEILDIGSDLDIVQKSGAWYSYNDERLGQGRENSKQFLKENKDIRQTISQQ
IREHYKLDEPVDAPEEDDKEEFDL

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=485375 IE339_RS16755 WP_277933916.1 3177963..3178997(-) (recA) [Priestia koreensis strain FS-1]
GTGAACGATCGTCAAGCCGCATTAGATATGGCATTAAAACAAATTGAAAAGCAATTTGGTAAAGGCTCAATCATGAAATT
AGGTGAGCAAACGGATAGAAAGATTTCTACTGCATCAAGTGGGTCTTTAGCTCTTGATATTGCTCTAGGCGTAGGTGGAT
ATCCACGTGGCCGTATTATTGAAATTTATGGTCCAGAAAGCTCTGGTAAAACAACTGTAGCGTTACACGCGATTGCTGAG
GTTCAGCAAAACGGTGGACAGGCTGCATTTATCGACGCTGAGCATGCACTCGACCCTGATTATGCACAAAAGCTAGGCGT
TAACATTGATGAGCTTCTATTATCTCAACCAGATACTGGTGAGCAAGCTCTTGAAATTGCTGAAGCTCTTGTTCGAAGTG
GAGCTATTGATATTCTTGTTATTGACTCTGTAGCTGCATTAGTACCAAAAGCAGAGATCGAAGGGGAAATGGGTGATTCA
CACGTAGGTTTACAAGCTCGCCTAATGTCTCAAGCGCTTCGTAAGCTTTCTGGTGCAATCAACAAATCGAAAACAATTGC
TGTCTTCATTAACCAAATTCGTGAAAAAGTTGGAATTATGTTCGGTAACCCTGAAACGACACCAGGTGGCCGTGCACTTA
AATTCTACTCGTCTGTGCGTTTAGAAGTAAGACGTGCTGAACAACTGAAGCAAGGAAATGATGTTGTTGGTAACAAAACG
AAAATTAAAGTCGTGAAAAACAAAGTAGCACCACCATTCCGTGCTGCTGAAGTTGACATTATGTACGGAGAAGGAATTTC
AAAAGAAGGTGAAATTCTAGATATCGGTTCAGATCTTGATATCGTTCAAAAAAGTGGAGCTTGGTACTCTTACAATGATG
AACGTTTAGGGCAAGGACGTGAAAACTCTAAGCAGTTCTTAAAAGAGAACAAAGACATTCGTCAAACAATCTCACAACAA
ATCCGTGAGCACTATAAGCTTGATGAACCTGTCGATGCACCAGAAGAAGATGACAAGGAAGAGTTTGATCTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

89.634

95.349

0.855
  recA Latilactobacillus sakei subsp. sakei 23K

72.917

97.674

0.712
  recA Streptococcus pneumoniae D39

67.826

100

0.68
  recA Streptococcus pneumoniae Rx1

67.826

100

0.68
  recA Streptococcus pneumoniae R6

67.826

100

0.68
  recA Streptococcus pneumoniae TIGR4

67.826

100

0.68
  recA Streptococcus mutans UA159

68.023

100

0.68
  recA Streptococcus mitis SK321

68.843

97.965

0.674
  recA Streptococcus mitis NCTC 12261

70.213

95.64

0.672
  recA Streptococcus pyogenes NZ131

68.293

95.349

0.651
  recA Lactococcus lactis subsp. cremoris KW2

67.173

95.64

0.642
  recA Neisseria gonorrhoeae strain FA1090

66.77

93.605

0.625
  recA Neisseria gonorrhoeae MS11

66.77

93.605

0.625
  recA Neisseria gonorrhoeae MS11

66.77

93.605

0.625
  recA Helicobacter pylori strain NCTC11637

61.988

99.419

0.616
  recA Helicobacter pylori 26695

61.988

99.419

0.616
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.584

99.128

0.61
  recA Acinetobacter baylyi ADP1

60.58

100

0.608
  recA Acinetobacter baumannii D1279779

61.111

99.419

0.608
  recA Glaesserella parasuis strain SC1401

59.827

100

0.602
  recA Ralstonia pseudosolanacearum GMI1000

66.774

90.116

0.602
  recA Vibrio cholerae strain A1552

64.174

93.314

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

93.314

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.195

95.349

0.593
  recA Pseudomonas stutzeri DSM 10701

63.438

93.023

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.938

93.023

0.567