Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   IE339_RS16760 Genome accession   NZ_CP061868
Coordinates   3179251..3180489 (-) Length   412 a.a.
NCBI ID   WP_242169383.1    Uniprot ID   -
Organism   Priestia koreensis strain FS-1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3174251..3185489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE339_RS16740 (IE339_16725) spoVS 3174505..3174765 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  IE339_RS16745 (IE339_16730) - 3175005..3175802 (-) 798 WP_242169382.1 TIGR00282 family metallophosphoesterase -
  IE339_RS16750 (IE339_16735) rny 3175919..3177481 (-) 1563 WP_053401622.1 ribonuclease Y -
  IE339_RS16755 (IE339_16740) recA 3177963..3178997 (-) 1035 WP_277933916.1 recombinase RecA Machinery gene
  IE339_RS16760 (IE339_16745) cinA 3179251..3180489 (-) 1239 WP_242169383.1 competence/damage-inducible protein A Machinery gene
  IE339_RS16765 (IE339_16750) pgsA 3180511..3181095 (-) 585 WP_242169384.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IE339_RS16770 (IE339_16755) - 3181291..3182271 (-) 981 WP_242169385.1 RodZ domain-containing protein -
  IE339_RS16775 (IE339_16760) - 3182284..3183075 (-) 792 WP_053401627.1 DUF3388 domain-containing protein -
  IE339_RS16780 (IE339_16765) - 3183354..3183653 (-) 300 WP_242169386.1 DUF3243 domain-containing protein -
  IE339_RS16785 (IE339_16770) - 3183743..3184459 (-) 717 WP_242169387.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45278.76 Da        Isoelectric Point: 5.1242

>NTDB_id=485376 IE339_RS16760 WP_242169383.1 3179251..3180489(-) (cinA) [Priestia koreensis strain FS-1]
MNAEIIAVGSELLLGQIANTNAQFLSKQLAEIGINVFFHTVVGDNEQRLEDTIHQASKRADLIIFTGGLGPTKDDLTKET
IARVLGKSLVTDEQAMRSIEMYFEKTGRTMTPNNRKQALVLEGASVLTNDYGMAPGMAIEVSGKRYMLFPGPPKELQPMF
LNHGRAYLLNQLAVKERIESRVLRFFGIGESQLETEIEDLLEAQTNPTIAPLAGDGEVTLRITAKHESLTEVNRLIDEAE
AAIMARVGEFFYGYNETTLPSELVRELEAQKLTIASAESLTGGLFSERLTEIPGTSQIVKGAIISYQTEVKNQVLNVRSE
TIEKHGVVSEQCAIEMAEQVMSKLGSDIGVSFTGVAGPGTQEDQPVGTVHIAIARKNEKTKAYLLQLSGGRQAIRMRSVR
YACQYLLKELRS

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=485376 IE339_RS16760 WP_242169383.1 3179251..3180489(-) (cinA) [Priestia koreensis strain FS-1]
ATGAACGCAGAAATTATCGCAGTTGGATCTGAGCTATTGTTAGGTCAAATTGCTAATACAAACGCCCAGTTCCTCTCAAA
GCAGCTAGCTGAGATCGGAATTAACGTCTTCTTTCACACAGTCGTAGGAGACAACGAACAGCGTTTAGAAGATACCATTC
ATCAAGCTAGTAAGCGCGCTGATTTAATTATTTTTACTGGCGGTCTCGGACCAACGAAGGATGACTTGACAAAAGAAACG
ATTGCAAGAGTATTAGGAAAATCGCTTGTGACCGATGAGCAGGCGATGAGAAGCATTGAGATGTATTTCGAAAAAACAGG
ACGAACGATGACACCTAACAATCGCAAGCAGGCGCTTGTGCTAGAAGGTGCCTCCGTTTTAACCAATGATTACGGAATGG
CTCCTGGAATGGCCATTGAAGTAAGTGGCAAGCGCTACATGCTATTCCCGGGACCACCGAAAGAACTACAGCCAATGTTT
TTAAATCATGGTCGTGCTTATTTACTCAACCAGCTAGCGGTTAAGGAGCGCATTGAATCGCGCGTCCTTCGCTTCTTTGG
AATTGGTGAGTCACAGCTAGAGACAGAAATTGAAGATCTGCTAGAGGCACAGACGAATCCAACGATTGCTCCTCTTGCAG
GAGACGGTGAAGTAACGCTACGGATTACAGCAAAGCACGAATCGCTTACAGAAGTGAACCGTTTGATTGACGAAGCGGAA
GCAGCGATTATGGCACGCGTGGGCGAATTTTTCTACGGATATAATGAAACAACGCTTCCTTCTGAGCTAGTAAGAGAGCT
TGAAGCACAGAAGCTAACCATTGCATCTGCAGAAAGTTTAACGGGAGGTCTTTTCTCTGAACGTTTAACGGAAATTCCAG
GAACGTCGCAAATTGTAAAAGGAGCGATTATTTCCTATCAAACGGAAGTGAAGAATCAGGTGTTAAACGTTCGTTCAGAG
ACAATTGAGAAGCATGGTGTCGTAAGTGAGCAATGTGCGATTGAAATGGCTGAGCAGGTGATGAGCAAACTAGGCTCTGA
TATTGGGGTAAGCTTCACTGGGGTTGCAGGACCAGGCACCCAAGAAGATCAACCGGTCGGGACTGTGCATATTGCCATTG
CCCGAAAAAATGAAAAAACGAAGGCGTATTTGCTGCAATTATCAGGCGGTCGCCAGGCGATTAGAATGCGTTCTGTTCGC
TACGCATGTCAGTATTTACTAAAAGAATTACGTTCATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.333

99.029

0.578
  cinA Streptococcus pneumoniae TIGR4

48.341

100

0.495
  cinA Streptococcus mitis NCTC 12261

48.104

100

0.493
  cinA Streptococcus pneumoniae Rx1

47.867

100

0.49
  cinA Streptococcus mitis SK321

47.867

100

0.49
  cinA Streptococcus pneumoniae R6

47.867

100

0.49
  cinA Streptococcus pneumoniae D39

47.63

100

0.488
  cinA Streptococcus mutans UA159

43.645

100

0.442
  cinA Streptococcus suis isolate S10

41.27

91.748

0.379