Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PPM_RS10245 Genome accession   NC_017542
Coordinates   2246015..2247076 (+) Length   353 a.a.
NCBI ID   WP_025679773.1    Uniprot ID   A0A3G8R5S9
Organism   Paenibacillus polymyxa M1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2241015..2252076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM_RS10225 (PPM_1957) - 2241650..2242744 (+) 1095 WP_013370748.1 helix-turn-helix domain-containing protein -
  PPM_RS29605 (PPM_1958) - 2242829..2242993 (+) 165 WP_013370749.1 hypothetical protein -
  PPM_RS10230 (PPM_1959) - 2243138..2243629 (+) 492 WP_013370750.1 YajQ family cyclic di-GMP-binding protein -
  PPM_RS10235 (PPM_1960) pgsA 2243838..2244425 (+) 588 WP_013370751.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PPM_RS10240 (PPM_1961) cinA 2244519..2245787 (+) 1269 WP_013370752.1 competence/damage-inducible protein A Machinery gene
  PPM_RS10245 (PPM_1962) recA 2246015..2247076 (+) 1062 WP_025679773.1 recombinase RecA Machinery gene
  PPM_RS10250 (PPM_1963) - 2247289..2248038 (+) 750 WP_013370754.1 regulatory protein RecX -
  PPM_RS10255 (PPM_1964) rny 2248400..2249944 (+) 1545 WP_013309958.1 ribonuclease Y -
  PPM_RS10260 (PPM_1965) - 2250021..2250815 (+) 795 WP_043885929.1 TIGR00282 family metallophosphoesterase -
  PPM_RS10265 (PPM_1966) - 2250945..2251205 (+) 261 WP_007430104.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38233.57 Da        Isoelectric Point: 4.9974

>NTDB_id=48393 PPM_RS10245 WP_025679773.1 2246015..2247076(+) (recA) [Paenibacillus polymyxa M1]
MSDRRAALDMALRQIEKQFGKGSIMKLGESTHMQVETIPSGSIALDIALGTGGFPRGRIIEVYGPESSGKTTVALHAIAE
VQKTGGQAAFIDAEHALDPSYASKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESLKMGNDIVGNRT
RIKVVKNKVAPPFRQAEVDIMYGEGISKEGSLIDIGTEHDIVDKSGAWYSYEGERLGQGRENAKQFLKENPNIASTIEQK
IRVASNLITTIAPPTEEELAQEAKEEQELLELE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=48393 PPM_RS10245 WP_025679773.1 2246015..2247076(+) (recA) [Paenibacillus polymyxa M1]
TTGTCAGATCGTCGTGCTGCGCTGGATATGGCGCTCCGTCAAATAGAAAAGCAATTTGGTAAAGGTTCCATCATGAAGTT
GGGTGAGTCTACCCACATGCAAGTGGAAACAATCCCCAGTGGTTCGATTGCTTTGGATATTGCGTTAGGAACGGGCGGCT
TTCCAAGAGGCCGGATTATTGAAGTATATGGACCGGAATCATCCGGTAAAACGACAGTAGCTCTTCATGCTATCGCAGAG
GTGCAAAAAACAGGCGGACAAGCCGCCTTTATCGATGCCGAGCATGCACTTGATCCGTCGTATGCGAGCAAGCTGGGTGT
CAATATTGATGAGTTGTTACTATCGCAACCAGATACAGGTGAGCAGGCATTGGAGATTGCCGAAGCTCTTGTGCGTAGTG
GGGCAGTGGACATTATCGTCGTTGACTCTGTAGCGGCACTTGTACCGAAGGCAGAGATTGAAGGCGAAATGGGAGATTCC
CATGTCGGTCTTCAAGCGCGCTTGATGTCACAGGCATTGCGTAAGCTGTCTGGAGCCATTAATAAATCGAAAACCATTGC
TATCTTTATCAACCAGCTCCGTGAAAAAGTAGGTGTTATGTTCGGTAACCCTGAAACTACACCGGGTGGACGTGCCTTGA
AGTTTTACTCTACGGTACGTTTGGATGTTCGTCGTATCGAAAGCTTGAAAATGGGTAACGACATCGTGGGTAACCGTACA
CGTATTAAAGTCGTGAAGAATAAAGTCGCACCTCCTTTCCGTCAGGCTGAAGTGGATATTATGTACGGTGAGGGCATTTC
CAAAGAAGGAAGCTTGATCGATATCGGTACGGAGCACGACATTGTCGACAAGAGCGGAGCATGGTATTCCTACGAAGGCG
AGCGCCTTGGTCAGGGACGTGAGAATGCAAAGCAATTTTTGAAGGAAAATCCGAACATTGCTAGTACGATCGAGCAAAAA
ATCCGGGTGGCCAGTAATTTGATTACAACAATTGCTCCACCGACAGAAGAAGAGTTGGCGCAGGAGGCCAAGGAAGAACA
GGAATTGCTGGAGCTTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G8R5S9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.714

91.218

0.782
  recA Latilactobacillus sakei subsp. sakei 23K

71.681

96.034

0.688
  recA Streptococcus mitis NCTC 12261

66.762

98.867

0.66
  recA Streptococcus mitis SK321

66.476

98.867

0.657
  recA Streptococcus mutans UA159

66

99.15

0.654
  recA Streptococcus pneumoniae R6

68.58

93.768

0.643
  recA Streptococcus pneumoniae D39

68.58

93.768

0.643
  recA Streptococcus pneumoniae TIGR4

68.58

93.768

0.643
  recA Streptococcus pneumoniae Rx1

68.58

93.768

0.643
  recA Streptococcus pyogenes NZ131

68.923

92.068

0.635
  recA Lactococcus lactis subsp. cremoris KW2

66.767

93.768

0.626
  recA Neisseria gonorrhoeae MS11

64.97

94.618

0.615
  recA Neisseria gonorrhoeae MS11

64.97

94.618

0.615
  recA Neisseria gonorrhoeae strain FA1090

64.97

94.618

0.615
  recA Acinetobacter baylyi ADP1

61.364

99.717

0.612
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.188

90.652

0.609
  recA Vibrio cholerae strain A1552

67.188

90.652

0.609
  recA Acinetobacter baumannii D1279779

61.782

98.584

0.609
  recA Pseudomonas stutzeri DSM 10701

62.757

96.601

0.606
  recA Glaesserella parasuis strain SC1401

61.143

99.15

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.205

95.467

0.603
  recA Ralstonia pseudosolanacearum GMI1000

67.532

87.252

0.589
  recA Helicobacter pylori 26695

61.243

95.751

0.586
  recA Helicobacter pylori strain NCTC11637

60.947

95.751

0.584
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.27

92.351

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

91.501

0.55

Multiple sequence alignment