Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PPM_RS10240 Genome accession   NC_017542
Coordinates   2244519..2245787 (+) Length   422 a.a.
NCBI ID   WP_013370752.1    Uniprot ID   -
Organism   Paenibacillus polymyxa M1     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2239519..2250787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM_RS10215 (PPM_1955) - 2240363..2240617 (+) 255 WP_013370745.1 DUF3243 domain-containing protein -
  PPM_RS10220 (PPM_1956) - 2240846..2241619 (+) 774 WP_013370747.1 DUF3388 domain-containing protein -
  PPM_RS10225 (PPM_1957) - 2241650..2242744 (+) 1095 WP_013370748.1 helix-turn-helix domain-containing protein -
  PPM_RS29605 (PPM_1958) - 2242829..2242993 (+) 165 WP_013370749.1 hypothetical protein -
  PPM_RS10230 (PPM_1959) - 2243138..2243629 (+) 492 WP_013370750.1 YajQ family cyclic di-GMP-binding protein -
  PPM_RS10235 (PPM_1960) pgsA 2243838..2244425 (+) 588 WP_013370751.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PPM_RS10240 (PPM_1961) cinA 2244519..2245787 (+) 1269 WP_013370752.1 competence/damage-inducible protein A Machinery gene
  PPM_RS10245 (PPM_1962) recA 2246015..2247076 (+) 1062 WP_025679773.1 recombinase RecA Machinery gene
  PPM_RS10250 (PPM_1963) - 2247289..2248038 (+) 750 WP_013370754.1 regulatory protein RecX -
  PPM_RS10255 (PPM_1964) rny 2248400..2249944 (+) 1545 WP_013309958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46426.46 Da        Isoelectric Point: 4.7168

>NTDB_id=48392 PPM_RS10240 WP_013370752.1 2244519..2245787(+) (cinA) [Paenibacillus polymyxa M1]
MKAEIIAVGTELLLGQIVNTNAQYLSQELATIGIDVYFQTVVGDNMDRLQEAVRLAQKRADIILFSGGLGPTQDDLTKDA
IAVVLGRKLQIDRLAMDKLDQFFRNRGVEMTENNRRQALSIEGATPLENETGLAIGDAIAQDGKFYVVLPGPPKELKPMF
ANHAKPWLLQQALSGEEMPIYSKMLKFAGIGESALETRLLDLIESQTDPTIAPYAKEGEVTIRISTKAASESEALIKLTA
TEVQIQQRLSEYMYASEDVTLEKVIVDLMAKRGLTVSAAESCTGGMLMEHITSIPGSAVMFQGGIVCYSNEMKMKLLNVP
YDYLEGDHAPGAVSKEVALVLAEQARMIMDSDFGLSVTGVAGPGYSERKPVGLVYIGIAERDKETEVYELNLSGNRETIR
LRSVKAILYRLWRRLVENEKLS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=48392 PPM_RS10240 WP_013370752.1 2244519..2245787(+) (cinA) [Paenibacillus polymyxa M1]
ATGAAAGCTGAAATCATTGCAGTAGGAACAGAGTTATTACTTGGACAAATAGTAAATACAAATGCCCAATATTTGTCGCA
AGAGCTAGCTACTATCGGAATTGATGTATATTTTCAGACTGTAGTTGGCGATAACATGGATCGACTTCAGGAAGCGGTAC
GTCTTGCTCAGAAGCGTGCGGATATTATTTTGTTTTCTGGTGGGCTGGGGCCAACTCAGGACGATTTGACAAAAGATGCG
ATAGCGGTTGTACTGGGGCGAAAATTGCAGATAGATCGTCTTGCCATGGACAAGCTGGATCAGTTTTTCCGTAACCGTGG
GGTAGAAATGACCGAGAATAACCGCCGCCAGGCGCTTTCTATTGAAGGAGCCACTCCGCTTGAAAATGAGACGGGTTTAG
CTATAGGGGATGCCATTGCACAGGACGGTAAATTTTATGTGGTTTTGCCCGGACCACCTAAGGAACTTAAACCTATGTTT
GCAAATCATGCTAAACCATGGTTGCTTCAGCAGGCATTAAGCGGTGAGGAGATGCCGATTTATTCGAAAATGCTAAAATT
CGCAGGGATCGGTGAGTCAGCTCTTGAAACGCGCTTGTTAGATCTGATCGAATCCCAGACGGACCCCACGATTGCTCCTT
ATGCCAAGGAAGGGGAAGTCACGATCCGTATATCCACCAAGGCGGCCAGTGAGAGTGAAGCTTTAATTAAGCTGACGGCT
ACGGAAGTACAAATTCAGCAGCGTCTTTCCGAATATATGTATGCAAGTGAGGATGTTACGCTGGAGAAGGTGATTGTAGA
TTTAATGGCCAAGCGCGGACTTACTGTGAGCGCAGCGGAAAGCTGTACAGGCGGTATGCTGATGGAACACATCACTTCTA
TACCTGGCAGTGCTGTTATGTTTCAAGGTGGCATCGTGTGTTATTCCAATGAAATGAAGATGAAATTGCTCAATGTGCCT
TATGATTATTTGGAAGGGGATCATGCGCCAGGCGCAGTGAGTAAGGAAGTAGCCCTTGTGCTTGCAGAGCAGGCAAGGAT
GATTATGGACAGCGATTTCGGACTTTCTGTTACTGGTGTAGCTGGGCCCGGATATTCCGAGCGGAAGCCAGTCGGCCTGG
TGTATATTGGTATTGCTGAGCGCGACAAGGAAACAGAAGTATATGAGCTGAATTTAAGCGGTAACCGTGAGACCATCCGT
TTGCGATCCGTCAAAGCTATCCTGTACAGATTGTGGCGCCGATTGGTAGAGAACGAGAAACTCTCTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(260-414)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50

97.156

0.486
  cinA Streptococcus pneumoniae TIGR4

49.756

97.156

0.483
  cinA Streptococcus mitis NCTC 12261

49.512

97.156

0.481
  cinA Streptococcus pneumoniae Rx1

49.512

97.156

0.481
  cinA Streptococcus pneumoniae R6

49.512

97.156

0.481
  cinA Streptococcus pneumoniae D39

49.268

97.156

0.479
  cinA Bacillus subtilis subsp. subtilis str. 168

48.02

95.735

0.46
  cinA Streptococcus mutans UA159

45.176

100

0.455
  cinA Streptococcus suis isolate S10

44.819

91.469

0.41

Multiple sequence alignment