Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IC803_RS10715 Genome accession   NZ_CP061474
Coordinates   2173978..2175021 (-) Length   347 a.a.
NCBI ID   WP_081206938.1    Uniprot ID   A0A1V9BF92
Organism   Geobacillus sp. 46C-IIa     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2168978..2180021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC803_RS10695 (IC803_10695) - 2169586..2170509 (-) 924 WP_081206941.1 dipeptidase -
  IC803_RS10700 (IC803_10700) spoVS 2170602..2170862 (-) 261 WP_008878506.1 stage V sporulation protein SpoVS -
  IC803_RS10705 (IC803_10705) - 2170992..2171786 (-) 795 WP_081206940.1 TIGR00282 family metallophosphoesterase -
  IC803_RS10710 (IC803_10710) rny 2171896..2173452 (-) 1557 WP_081206939.1 ribonuclease Y -
  IC803_RS10715 (IC803_10715) recA 2173978..2175021 (-) 1044 WP_081206938.1 recombinase RecA Machinery gene
  IC803_RS10720 (IC803_10720) cinA 2175202..2176446 (-) 1245 WP_081206937.1 competence/damage-inducible protein A Machinery gene
  IC803_RS10725 (IC803_10725) pgsA 2176473..2177051 (-) 579 WP_081206936.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IC803_RS10730 (IC803_10730) - 2177130..2178020 (-) 891 WP_081206935.1 helix-turn-helix domain-containing protein -
  IC803_RS10735 (IC803_10735) - 2178046..2178837 (-) 792 WP_081206934.1 DUF3388 domain-containing protein -
  IC803_RS10740 (IC803_10740) - 2178965..2179213 (-) 249 WP_081206933.1 DUF3243 domain-containing protein -
  IC803_RS10745 (IC803_10745) ymfI 2179277..2179993 (-) 717 WP_081206932.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37627.83 Da        Isoelectric Point: 5.3468

>NTDB_id=482563 IC803_RS10715 WP_081206938.1 2173978..2175021(-) (recA) [Geobacillus sp. 46C-IIa]
MNQDRQAALEQALKQIERQFGKGAIMKLGEQAERQISTVPSGSLALDIALGVGGYPRGRIVEIYGPESSGKTTVALHAIA
EVQKRGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGD
AHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQIKQGNDMVGNK
TKIKVVKNKVAPPFKTADVDIMYGEGISREGEIIDMASELDIVQKSGSWYSYKDERLGQGRENAKQFLKENPHIADEIAR
AIRKHYGIDAGEAGGEPQQDEFGLLDE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=482563 IC803_RS10715 WP_081206938.1 2173978..2175021(-) (recA) [Geobacillus sp. 46C-IIa]
GTGAACCAAGATCGTCAAGCCGCCTTAGAGCAGGCATTAAAACAAATTGAACGACAGTTTGGCAAGGGGGCTATTATGAA
GCTCGGCGAGCAGGCGGAGCGGCAAATCTCGACCGTTCCGAGCGGCTCGCTGGCGCTCGACATCGCGTTGGGCGTCGGCG
GTTACCCGCGCGGGCGAATCGTCGAGATTTACGGTCCGGAATCGTCCGGGAAAACGACCGTTGCCCTTCATGCGATCGCT
GAAGTGCAAAAACGGGGTGGGCAGGCAGCTTTCATCGACGCAGAGCATGCGCTTGATCCGATTTATGCACAAAAATTAGG
GGTCAACATCGATGAGTTGTTGCTTTCCCAACCCGACACAGGCGAACAGGCGCTCGAAATTGCTGAAGCGCTCGTGCGAA
GCGGTGCGGTCGATATTATCGTCATCGACTCGGTGGCGGCGCTCGTGCCGAAAGCAGAAATTGAAGGGGAGATGGGCGAC
GCCCACGTCGGCTTGCAAGCCCGCCTCATGTCGCAGGCGCTCCGCAAGCTGTCCGGCGCCATTAACAAATCGAAAACGAT
CGCCATCTTCATCAACCAAATTCGCGAAAAAGTTGGGGTTATGTTCGGCAATCCGGAAACGACGCCAGGGGGACGGGCGC
TTAAGTTTTACGCTTCCGTCCGCCTAGAGGTGCGCCGCGCCGAGCAAATTAAACAAGGCAATGACATGGTGGGCAACAAA
ACGAAAATCAAAGTCGTCAAAAACAAAGTCGCTCCGCCGTTTAAAACGGCCGACGTCGACATTATGTACGGCGAAGGCAT
TTCTCGCGAAGGGGAAATTATCGATATGGCGTCCGAGCTTGACATCGTGCAAAAGAGCGGTTCGTGGTATTCGTACAAAG
ACGAACGGCTCGGCCAAGGGCGGGAAAACGCGAAGCAGTTTTTGAAAGAAAACCCTCACATCGCCGACGAGATCGCCCGC
GCCATTCGTAAACATTACGGCATCGATGCCGGCGAGGCGGGCGGCGAACCGCAGCAAGACGAGTTCGGGCTGCTTGACGA
GTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V9BF92

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.81

93.948

0.816
  recA Latilactobacillus sakei subsp. sakei 23K

77.231

93.66

0.723
  recA Streptococcus mitis NCTC 12261

69.164

100

0.692
  recA Streptococcus mitis SK321

68.588

100

0.686
  recA Streptococcus pneumoniae R6

70.871

95.965

0.68
  recA Streptococcus pneumoniae Rx1

70.871

95.965

0.68
  recA Streptococcus pneumoniae D39

70.871

95.965

0.68
  recA Streptococcus pneumoniae TIGR4

70.871

95.965

0.68
  recA Streptococcus mutans UA159

70.517

94.813

0.669
  recA Streptococcus pyogenes NZ131

70.427

94.524

0.666
  recA Lactococcus lactis subsp. cremoris KW2

68.693

94.813

0.651
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.45

98.559

0.625
  recA Ralstonia pseudosolanacearum GMI1000

68.371

90.202

0.617
  recA Neisseria gonorrhoeae MS11

64.545

95.101

0.614
  recA Neisseria gonorrhoeae MS11

64.545

95.101

0.614
  recA Neisseria gonorrhoeae strain FA1090

64.545

95.101

0.614
  recA Acinetobacter baumannii D1279779

61.877

98.271

0.608
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.815

93.372

0.605
  recA Vibrio cholerae strain A1552

64.815

93.372

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.526

94.813

0.602
  recA Pseudomonas stutzeri DSM 10701

60.819

98.559

0.599
  recA Glaesserella parasuis strain SC1401

63.975

92.795

0.594
  recA Acinetobacter baylyi ADP1

63.077

93.66

0.591
  recA Helicobacter pylori strain NCTC11637

62.5

94.524

0.591
  recA Helicobacter pylori 26695

62.5

94.524

0.591
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.461

91.354

0.571