Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   IC803_RS10720 Genome accession   NZ_CP061474
Coordinates   2175202..2176446 (-) Length   414 a.a.
NCBI ID   WP_081206937.1    Uniprot ID   -
Organism   Geobacillus sp. 46C-IIa     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2170202..2181446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC803_RS10700 (IC803_10700) spoVS 2170602..2170862 (-) 261 WP_008878506.1 stage V sporulation protein SpoVS -
  IC803_RS10705 (IC803_10705) - 2170992..2171786 (-) 795 WP_081206940.1 TIGR00282 family metallophosphoesterase -
  IC803_RS10710 (IC803_10710) rny 2171896..2173452 (-) 1557 WP_081206939.1 ribonuclease Y -
  IC803_RS10715 (IC803_10715) recA 2173978..2175021 (-) 1044 WP_081206938.1 recombinase RecA Machinery gene
  IC803_RS10720 (IC803_10720) cinA 2175202..2176446 (-) 1245 WP_081206937.1 competence/damage-inducible protein A Machinery gene
  IC803_RS10725 (IC803_10725) pgsA 2176473..2177051 (-) 579 WP_081206936.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IC803_RS10730 (IC803_10730) - 2177130..2178020 (-) 891 WP_081206935.1 helix-turn-helix domain-containing protein -
  IC803_RS10735 (IC803_10735) - 2178046..2178837 (-) 792 WP_081206934.1 DUF3388 domain-containing protein -
  IC803_RS10740 (IC803_10740) - 2178965..2179213 (-) 249 WP_081206933.1 DUF3243 domain-containing protein -
  IC803_RS10745 (IC803_10745) ymfI 2179277..2179993 (-) 717 WP_081206932.1 elongation factor P 5-aminopentanone reductase -
  IC803_RS10750 (IC803_10750) yfmH 2180051..2181340 (-) 1290 WP_081206931.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44594.05 Da        Isoelectric Point: 6.0794

>NTDB_id=482564 IC803_RS10720 WP_081206937.1 2175202..2176446(-) (cinA) [Geobacillus sp. 46C-IIa]
MNAEIIAVGSELLLGQIANTNAQFLSQQLAELGINVYFHTAVGDNAARLEQAVNVAQARADLILFTGGLGPTKDDLTKET
IARLLGRRLVTDEEALRAIEAYFVRTNRPMTENNKKQALVLEGSAVLKNEHGMAPGMALSVNGITYMLLPGPPKEMRPMF
TKYGRAFLRSAFSLSERIESRVLRFFGIGESALETAIADLIDAQSNPTIAPLAGDGEVTLRLTAKHRDQAEAKRLLDQTE
AAILTRVGRYCYGYNDETLFTKTIERLKERGWTVAAAESLTGGRFLEQLTAIPGASAVVQGGVVCYTNGVKERMLGVPQP
LLETDGAVSEPCARLLAENVRAMCGADVGISFTGVAGPDPLEGHPPGTVYVGIAVRGRDTAVHRLTLSGTRDDIRVRTAK
YGCFFLLETLAAGD

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=482564 IC803_RS10720 WP_081206937.1 2175202..2176446(-) (cinA) [Geobacillus sp. 46C-IIa]
TTGAATGCGGAAATTATCGCTGTCGGCTCCGAGTTGCTGCTCGGACAAATTGCCAACACGAACGCCCAGTTTTTGTCGCA
GCAGCTCGCCGAACTTGGCATTAACGTCTATTTCCATACCGCCGTCGGCGACAATGCCGCCCGTCTCGAACAGGCGGTCA
ACGTGGCACAGGCCAGGGCAGACTTGATCCTTTTCACCGGCGGGCTCGGCCCGACGAAAGACGATTTGACGAAAGAGACG
ATCGCCCGTCTGCTCGGCCGCCGGCTCGTCACTGACGAGGAGGCGTTGCGGGCGATTGAAGCGTACTTTGTCCGCACGAA
CCGGCCAATGACAGAAAACAACAAAAAGCAGGCGCTCGTTTTGGAAGGATCGGCAGTGTTGAAAAACGAGCACGGCATGG
CGCCGGGGATGGCGCTTTCAGTCAATGGCATTACATACATGCTGCTGCCCGGGCCGCCGAAAGAAATGCGGCCGATGTTT
ACAAAATACGGACGCGCGTTTTTGCGCAGCGCGTTTTCGCTTTCAGAGCGCATCGAATCGCGCGTGCTTCGCTTTTTTGG
CATCGGTGAATCGGCGTTGGAAACGGCGATCGCCGATTTGATTGACGCCCAGTCCAATCCGACGATCGCCCCGCTGGCCG
GCGATGGGGAAGTAACGCTCCGCCTGACGGCGAAGCACCGGGATCAGGCGGAGGCGAAACGGTTGCTTGATCAAACGGAA
GCGGCCATTTTGACGCGCGTCGGCCGCTATTGTTACGGATATAACGACGAAACGTTGTTTACGAAAACGATCGAACGGTT
AAAAGAAAGAGGATGGACGGTCGCTGCGGCTGAGAGCCTGACCGGCGGGCGGTTTCTCGAACAGCTGACAGCCATCCCGG
GCGCGTCGGCTGTCGTGCAAGGCGGCGTCGTCTGCTACACAAACGGCGTGAAAGAAAGGATGCTTGGCGTGCCGCAGCCG
CTGCTTGAGACGGACGGGGCGGTGAGCGAACCGTGCGCCCGCTTGCTTGCCGAAAACGTCCGCGCGATGTGCGGCGCTGA
TGTTGGCATCAGCTTTACCGGCGTCGCCGGCCCCGACCCGCTTGAGGGCCACCCGCCCGGCACCGTTTATGTCGGCATCG
CCGTCCGCGGGCGCGACACAGCCGTCCACCGCCTCACCTTATCCGGCACGCGCGATGACATTCGCGTCCGCACCGCCAAA
TACGGTTGCTTCTTTTTGTTAGAGACGCTCGCGGCCGGCGACTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-167)

Competence-damaged protein (CinA)

(258-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.658

98.792

0.589
  cinA Streptococcus pneumoniae TIGR4

48.889

97.826

0.478
  cinA Streptococcus pneumoniae Rx1

48.642

97.826

0.476
  cinA Streptococcus mitis SK321

48.642

97.826

0.476
  cinA Streptococcus pneumoniae R6

48.642

97.826

0.476
  cinA Streptococcus pneumoniae D39

48.395

97.826

0.473
  cinA Streptococcus mitis NCTC 12261

48.395

97.826

0.473
  cinA Streptococcus mutans UA159

48.12

96.377

0.464
  cinA Streptococcus suis isolate S10

42.593

91.304

0.389