Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H9L18_RS02995 Genome accession   NZ_CP060720
Coordinates   575959..577011 (+) Length   350 a.a.
NCBI ID   WP_126791189.1    Uniprot ID   A0A430B9G1
Organism   Vagococcus carniphilus strain ATCC BAA-640     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 570959..582011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L18_RS02975 (H9L18_02975) - 572307..572828 (-) 522 WP_126791197.1 putative glycolipid-binding domain-containing protein -
  H9L18_RS02980 (H9L18_02980) sdaAA 572835..573707 (-) 873 WP_126791195.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  H9L18_RS02985 (H9L18_02985) sdaAB 573720..574385 (-) 666 WP_126791193.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  H9L18_RS02990 (H9L18_02990) cinA 574632..575867 (+) 1236 WP_126791191.1 competence/damage-inducible protein A Machinery gene
  H9L18_RS02995 (H9L18_02995) recA 575959..577011 (+) 1053 WP_126791189.1 recombinase RecA Machinery gene
  H9L18_RS03000 (H9L18_03000) rny 577229..578782 (+) 1554 WP_126791186.1 ribonuclease Y -
  H9L18_RS03005 (H9L18_03005) - 578959..579606 (+) 648 WP_126791184.1 helix-turn-helix domain-containing protein -
  H9L18_RS03010 (H9L18_03010) - 579697..581451 (+) 1755 WP_126791182.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37921.96 Da        Isoelectric Point: 4.6015

>NTDB_id=478033 H9L18_RS02995 WP_126791189.1 575959..577011(+) (recA) [Vagococcus carniphilus strain ATCC BAA-640]
MSDNRKAALDAALKKIEKDFGKGSVMKLGEKVDTQISTISSGSLALDSALGVGGYPRGRIVEVYGPESSGKTTVALHAIA
SVQKEGGTAAFIDAEHALDPKYAQALGVNIDELLLSQPDTGEQGLNIAEALVSSGAIDIVVVDSVAALVPRAEIDGEMGD
THVGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKQGTDIIGNR
TKIKVVKNKVAPPFRIAEVDIMYGEGISQEGELLDMAADKDIVNKSGAWYSYNEERIGQGRENAKKYFAEHPEMMEEIYQ
KVRVAYNIDDAEEIPEEDEPAEDLALDLEE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=478033 H9L18_RS02995 WP_126791189.1 575959..577011(+) (recA) [Vagococcus carniphilus strain ATCC BAA-640]
ATGTCAGATAACCGTAAAGCTGCCTTAGATGCAGCGTTAAAGAAAATAGAAAAAGATTTTGGTAAAGGATCAGTTATGAA
GTTGGGTGAAAAGGTAGATACACAAATATCTACTATTTCAAGTGGTTCATTAGCGCTAGATTCAGCACTAGGTGTAGGTG
GTTATCCAAGAGGACGAATTGTTGAAGTTTACGGTCCAGAAAGTTCCGGTAAAACAACAGTGGCTTTACATGCGATTGCA
TCTGTTCAAAAAGAAGGTGGAACAGCTGCCTTTATCGATGCTGAGCATGCTCTAGATCCTAAATATGCCCAAGCATTAGG
CGTTAACATTGATGAGTTGCTTTTATCTCAACCAGATACAGGTGAACAAGGATTAAATATTGCAGAAGCATTGGTTTCAA
GTGGTGCTATTGATATCGTTGTTGTCGATTCAGTAGCTGCTTTAGTTCCTCGTGCTGAGATTGATGGAGAAATGGGAGAT
ACTCACGTTGGATTACAAGCTCGTTTAATGTCTCAAGCGTTAAGAAAATTATCAGGTACTATTAATAAAACAAAAACAAT
TGCTATTTTCATTAACCAAATCCGTGAAAAAGTTGGTGTTATGTTTGGTAATCCTGAAACAACACCAGGAGGACGTGCCC
TTAAATTTTACGCAACTGTTCGTTTAGAAGTGCGTCGTGCAGAACAATTGAAACAAGGAACAGATATTATTGGTAACAGA
ACTAAAATTAAAGTAGTCAAAAATAAAGTAGCCCCACCATTTAGAATTGCAGAAGTAGATATTATGTATGGGGAAGGTAT
TTCACAAGAAGGTGAATTACTCGATATGGCAGCCGATAAAGATATCGTGAATAAGAGTGGAGCTTGGTACTCATATAACG
AAGAACGTATTGGTCAAGGTCGAGAAAATGCGAAGAAATACTTTGCTGAACATCCAGAAATGATGGAAGAAATTTATCAA
AAAGTAAGAGTGGCTTACAACATTGATGATGCAGAAGAAATACCTGAAGAAGATGAACCAGCAGAAGATTTAGCACTAGA
TTTAGAAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A430B9G1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.065

96.571

0.783
  recA Bacillus subtilis subsp. subtilis str. 168

79.394

94.286

0.749
  recA Streptococcus mitis NCTC 12261

69.944

100

0.711
  recA Streptococcus mutans UA159

68.32

100

0.709
  recA Streptococcus pyogenes NZ131

69.468

100

0.709
  recA Streptococcus mitis SK321

69.663

100

0.709
  recA Streptococcus pneumoniae R6

71.893

96.571

0.694
  recA Streptococcus pneumoniae Rx1

71.893

96.571

0.694
  recA Streptococcus pneumoniae D39

71.893

96.571

0.694
  recA Streptococcus pneumoniae TIGR4

71.893

96.571

0.694
  recA Lactococcus lactis subsp. cremoris KW2

69.76

95.429

0.666
  recA Neisseria gonorrhoeae MS11

64.506

92.571

0.597
  recA Neisseria gonorrhoeae MS11

64.506

92.571

0.597
  recA Neisseria gonorrhoeae strain FA1090

64.506

92.571

0.597
  recA Acinetobacter baumannii D1279779

59.714

100

0.597
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.641

98

0.594
  recA Helicobacter pylori 26695

59.827

98.857

0.591
  recA Helicobacter pylori strain NCTC11637

59.827

98.857

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.11

93.714

0.591
  recA Vibrio cholerae strain A1552

59.71

98.571

0.589
  recA Pseudomonas stutzeri DSM 10701

59.71

98.571

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.71

98.571

0.589
  recA Ralstonia pseudosolanacearum GMI1000

62.048

94.857

0.589
  recA Acinetobacter baylyi ADP1

60.058

98

0.589
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.665

92

0.586
  recA Glaesserella parasuis strain SC1401

62.928

91.714

0.577