Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   H9L18_RS02990 Genome accession   NZ_CP060720
Coordinates   574632..575867 (+) Length   411 a.a.
NCBI ID   WP_126791191.1    Uniprot ID   A0A430B9A4
Organism   Vagococcus carniphilus strain ATCC BAA-640     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 569632..580867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L18_RS02970 (H9L18_02970) - 570806..572116 (-) 1311 WP_126791199.1 MATE family efflux transporter -
  H9L18_RS02975 (H9L18_02975) - 572307..572828 (-) 522 WP_126791197.1 putative glycolipid-binding domain-containing protein -
  H9L18_RS02980 (H9L18_02980) sdaAA 572835..573707 (-) 873 WP_126791195.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  H9L18_RS02985 (H9L18_02985) sdaAB 573720..574385 (-) 666 WP_126791193.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  H9L18_RS02990 (H9L18_02990) cinA 574632..575867 (+) 1236 WP_126791191.1 competence/damage-inducible protein A Machinery gene
  H9L18_RS02995 (H9L18_02995) recA 575959..577011 (+) 1053 WP_126791189.1 recombinase RecA Machinery gene
  H9L18_RS03000 (H9L18_03000) rny 577229..578782 (+) 1554 WP_126791186.1 ribonuclease Y -
  H9L18_RS03005 (H9L18_03005) - 578959..579606 (+) 648 WP_126791184.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45618.22 Da        Isoelectric Point: 4.9399

>NTDB_id=478032 H9L18_RS02990 WP_126791191.1 574632..575867(+) (cinA) [Vagococcus carniphilus strain ATCC BAA-640]
MKAEIIAVGTEILLGQIVNTNAAYLSQYLTNLGFDIYHQEVVGDNEERLLKVLDEASKRSDLVVVCGGLGPTEDDLTKQT
VAKYVGKPLVYDEEALAHVIDFFKYSKKPMTENNKQQALTIEGAKTIQNNAGLACGLFYEKKRTRYLLLPGPPSEMKAMA
EDGVTPLLREILPNHTKLVSRYLRFIGIGESRLVTYLKELIDNQTNPTIAPYAKSNEVMLRITAKCESEEQGNQMLDVME
KEINQLVGGYFYGYGENLTMEEVVVSLLKEKQQTLTVVEGLTGGLCQNRLTDIPGSSSVYPGGFITYSTKSKADLLGLSV
EELESKGVYNQQTVEQLAIQGSNRMKTDYALAIIGIAGPTNEEDQPVGTLYLALKTPTTVLSETMIINRERDYIRDGAVK
HAFNLLRKHLE

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=478032 H9L18_RS02990 WP_126791191.1 574632..575867(+) (cinA) [Vagococcus carniphilus strain ATCC BAA-640]
ATGAAAGCGGAAATTATTGCAGTAGGAACAGAAATATTATTAGGTCAAATTGTTAATACGAACGCAGCTTACTTATCTCA
GTATTTAACTAATTTAGGGTTTGATATATATCATCAAGAAGTGGTCGGAGATAATGAAGAGAGGCTATTAAAGGTTCTTG
ATGAGGCAAGTAAACGCTCAGATTTAGTTGTTGTCTGTGGTGGATTAGGACCAACTGAAGATGATTTAACTAAACAAACA
GTTGCTAAATATGTCGGAAAACCATTAGTTTATGATGAAGAGGCTCTGGCACACGTTATTGACTTTTTTAAATACTCTAA
AAAACCAATGACTGAAAATAATAAACAACAGGCATTGACAATTGAAGGAGCTAAAACGATTCAAAATAATGCAGGTTTAG
CTTGTGGTTTATTTTATGAAAAGAAGAGGACACGTTACCTTTTATTACCTGGTCCACCAAGTGAAATGAAGGCTATGGCA
GAAGATGGTGTGACACCATTATTAAGAGAAATTCTCCCTAATCATACAAAATTAGTTTCAAGATATTTACGTTTTATTGG
AATAGGAGAATCTCGATTAGTAACGTATTTAAAAGAGTTAATTGATAATCAAACAAATCCAACCATTGCTCCTTATGCCA
AATCCAATGAAGTTATGTTAAGAATTACAGCAAAATGTGAGTCTGAAGAACAAGGTAACCAAATGTTAGACGTAATGGAA
AAAGAAATTAATCAACTAGTTGGAGGTTATTTCTACGGTTATGGAGAAAATCTTACTATGGAAGAAGTAGTGGTCTCTTT
ATTGAAAGAAAAGCAGCAAACATTAACCGTTGTGGAAGGATTAACAGGAGGATTGTGTCAAAATCGTCTAACTGATATTC
CGGGTAGCTCAAGTGTTTATCCTGGTGGCTTCATTACTTATTCCACAAAAAGTAAAGCTGATTTATTAGGTTTATCAGTT
GAAGAATTGGAATCAAAAGGTGTTTATAACCAACAGACAGTTGAACAACTAGCTATTCAAGGGAGTAATCGCATGAAAAC
CGATTATGCTCTAGCTATTATAGGCATAGCAGGTCCAACAAATGAGGAAGATCAACCTGTTGGCACACTTTACTTAGCTT
TAAAAACACCAACTACAGTGTTGAGTGAAACCATGATTATTAATAGGGAAAGAGACTATATTAGAGATGGCGCTGTAAAA
CATGCTTTTAACTTGTTAAGAAAACACTTAGAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(259-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A430B9A4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

47.43

100

0.494
  cinA Streptococcus mitis SK321

46.963

100

0.489
  cinA Streptococcus mutans UA159

48.068

100

0.484
  cinA Streptococcus pneumoniae TIGR4

46.588

100

0.482
  cinA Streptococcus pneumoniae Rx1

46.353

100

0.479
  cinA Streptococcus pneumoniae R6

46.353

100

0.479
  cinA Streptococcus pneumoniae D39

46.118

100

0.477
  cinA Streptococcus suis isolate S10

42.548

100

0.431
  cinA Bacillus subtilis subsp. subtilis str. 168

40.488

99.757

0.404