Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   J1G50_RS05805 Genome accession   NZ_CP071489
Coordinates   1155921..1158197 (+) Length   758 a.a.
NCBI ID   WP_164689667.1    Uniprot ID   -
Organism   Glaesserella parasuis strain YHP1815     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1150921..1163197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G50_RS05785 (J1G50_05785) galU 1151012..1151899 (-) 888 WP_021112344.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  J1G50_RS05790 (J1G50_05790) csrA 1152080..1152265 (-) 186 WP_021109569.1 carbon storage regulator CsrA -
  J1G50_RS05795 (J1G50_05795) alaS 1152329..1154956 (-) 2628 WP_021115993.1 alanine--tRNA ligase -
  J1G50_RS05800 (J1G50_05800) - 1155181..1155606 (-) 426 WP_164689481.1 universal stress protein -
  J1G50_RS05805 (J1G50_05805) rec2 1155921..1158197 (+) 2277 WP_164689667.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  J1G50_RS11875 - 1158338..1158457 (-) 120 Protein_1129 NAD-dependent epimerase/dehydratase family protein -
  J1G50_RS05815 (J1G50_05815) - 1158550..1158846 (-) 297 WP_021110790.1 YciI family protein -
  J1G50_RS05820 (J1G50_05820) yciA 1158858..1159298 (-) 441 WP_005711558.1 acyl-CoA thioester hydrolase YciA -
  J1G50_RS05825 (J1G50_05825) - 1159282..1159845 (-) 564 WP_021113566.1 septation protein A -
  J1G50_RS05830 (J1G50_05830) - 1159854..1160582 (-) 729 WP_021110792.1 hypothetical protein -
  J1G50_RS05835 (J1G50_05835) yfbV 1160761..1161195 (+) 435 WP_005711563.1 terminus macrodomain insulation protein YfbV -
  J1G50_RS05840 (J1G50_05840) tadA 1161177..1161713 (-) 537 WP_043894448.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 758 a.a.        Molecular weight: 86314.82 Da        Isoelectric Point: 9.0916

>NTDB_id=477223 J1G50_RS05805 WP_164689667.1 1155921..1158197(+) (rec2) [Glaesserella parasuis strain YHP1815]
MSIDRVCLMLFFGLLPLIVLPASWLGYMVVFSLALALWGVWRGKLGILLLGGVLAVSYAQIMQLAKKHQEQTAVKVQERV
LVKQILKQQEYQTAVVERANGDYVYVNWQADEPLILEASYNAELALKPLSARLNDGNFDRQKWYVAQHISATATVKKAVK
VNEQQGLRAIWLDRMREQTAPFATQGLLLALAFGERAWLSQSHWEIFQQTTTAHLIAISGSHIVLVYLLAFWAAKAGQWL
LLRFRYLKAVGLSLYFARGVGWCVALGYSFLAGFQIPTVRAMVAISLVLLVQYARRHYTPWQLWLRGVVLLVVFDPLTLL
SDSFWLSVLAVASLIIWYQAFPLKRFDFVKNMQNRVMKLLLELFHLQLGIWLVFSPIQLSFFDGTSPFALLANLIIVPLY
SFILIPLILFSLLTDNLFQTWWLCHQLAEWGIDWIEPFSHHWLYLSVDQQWGLICLNLLIIIGLYGVFQQRFSLYYGLAT
VVLPLALWIGFHFVKDTLKPPLVKWVNFDVGQGLAMGLIYQHQGKQKAILYDTGVAWQGGTMAELEILPYLRREGIVVEA
IFVSHDDNDHAGGVLPLLQAYPNARLILSGKNHYSNQVAEPCIAGNQWQFSTMHLEAIYPLQLSERAKNEHSCVLRVSIG
QYRLLLTGDSGIAEERQYASQIGKIDFLQVGHHGSKTSTSQTLLAHIQPTWAIISAGRWNPWKMPNSQVIQRLEQYQVKW
LNTAQVGMIQVDFYSDNYNISTARNRFSPWYQGIGANE

Nucleotide


Download         Length: 2277 bp        

>NTDB_id=477223 J1G50_RS05805 WP_164689667.1 1155921..1158197(+) (rec2) [Glaesserella parasuis strain YHP1815]
ATGTCTATTGATCGTGTCTGTTTAATGCTCTTTTTCGGTTTATTGCCGTTGATTGTTCTGCCTGCTTCGTGGCTTGGCTA
TATGGTGGTATTTTCTCTTGCCCTTGCATTATGGGGAGTATGGCGTGGGAAATTGGGGATCTTGCTGTTGGGTGGTGTGT
TAGCGGTGAGTTACGCCCAGATTATGCAACTTGCAAAAAAACATCAGGAACAGACCGCTGTTAAGGTGCAAGAGCGGGTG
TTAGTGAAGCAAATTTTAAAACAGCAAGAATATCAAACTGCCGTTGTAGAGCGTGCTAATGGGGACTATGTTTATGTCAA
TTGGCAAGCTGATGAGCCATTGATACTGGAAGCAAGTTATAACGCGGAACTGGCATTGAAGCCTTTGTCCGCTCGCTTAA
ATGATGGCAATTTTGATCGACAAAAATGGTATGTGGCTCAACATATCTCAGCAACAGCTACGGTCAAAAAAGCAGTAAAA
GTGAACGAACAACAAGGCTTGCGTGCAATTTGGCTTGATCGTATGCGAGAACAGACCGCCCCTTTTGCAACGCAAGGGTT
ACTGCTTGCCCTTGCTTTTGGTGAACGGGCTTGGTTAAGTCAAAGCCATTGGGAGATCTTTCAGCAAACAACCACTGCTC
ATTTGATTGCCATTTCAGGCTCGCATATTGTTCTGGTTTATCTGTTAGCCTTTTGGGCGGCGAAAGCTGGGCAGTGGTTA
TTATTGCGATTTCGTTATCTGAAAGCGGTGGGGTTGTCCTTGTATTTTGCAAGGGGAGTAGGGTGGTGTGTGGCGTTGGG
ATATAGTTTTTTGGCAGGCTTCCAAATTCCAACGGTACGGGCAATGGTGGCGATTTCATTGGTTTTGCTGGTGCAATATG
CTCGTCGTCATTATACGCCTTGGCAGTTATGGCTTCGTGGTGTGGTGCTATTAGTCGTCTTTGATCCGCTGACGTTACTT
TCCGATAGCTTTTGGCTCTCTGTTTTAGCTGTTGCTAGCCTAATTATTTGGTATCAGGCTTTTCCACTCAAGCGGTTTGA
TTTTGTCAAAAATATGCAAAATCGAGTGATGAAGTTGCTGTTAGAGTTGTTTCATCTGCAGTTAGGCATTTGGCTAGTGT
TCTCGCCTATTCAACTCAGTTTTTTTGATGGCACATCACCTTTCGCTTTGTTAGCCAATTTGATCATTGTTCCACTTTAT
AGCTTTATTCTTATCCCATTGATTTTATTTAGTTTATTAACAGATAACCTATTTCAAACTTGGTGGCTTTGCCATCAACT
TGCAGAGTGGGGGATTGATTGGATTGAGCCATTTTCCCATCATTGGCTCTATTTAAGTGTCGATCAACAATGGGGATTAA
TATGCCTTAATCTATTGATTATAATAGGATTATATGGTGTTTTTCAGCAACGTTTTTCTCTCTATTATGGGTTAGCAACA
GTGGTATTGCCTTTAGCATTGTGGATCGGATTTCATTTTGTAAAAGATACACTTAAACCACCACTTGTAAAATGGGTGAA
TTTTGATGTGGGGCAAGGGTTGGCAATGGGATTGATTTATCAACACCAAGGTAAACAGAAAGCCATTCTCTATGATACAG
GCGTTGCGTGGCAAGGTGGCACAATGGCGGAATTGGAAATACTGCCCTATTTACGCCGTGAAGGGATAGTGGTCGAAGCT
ATTTTTGTTAGCCACGATGATAACGATCACGCTGGGGGCGTTTTGCCATTACTACAAGCCTACCCAAATGCACGGTTGAT
CCTTTCGGGTAAAAATCATTATAGTAACCAAGTCGCCGAGCCTTGTATAGCAGGCAATCAGTGGCAGTTCAGCACAATGC
ACCTTGAAGCGATTTATCCTTTACAACTGAGCGAGCGAGCTAAAAATGAACACTCTTGTGTATTACGAGTGTCGATAGGG
CAATATAGATTGCTTCTTACTGGGGATAGTGGGATTGCGGAAGAACGACAATATGCAAGCCAGATCGGTAAGATCGATTT
TCTTCAAGTAGGACACCACGGCAGTAAAACCAGTACCAGCCAAACTTTGTTAGCTCACATCCAACCCACTTGGGCGATTA
TTTCGGCTGGGCGTTGGAACCCGTGGAAAATGCCAAATAGTCAAGTTATTCAACGGCTTGAGCAGTATCAAGTGAAGTGG
CTTAATACTGCTCAAGTGGGAATGATCCAAGTCGATTTTTATTCAGATAATTACAACATTTCCACCGCAAGAAACCGCTT
TAGTCCTTGGTATCAGGGGATAGGGGCAAATGAATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(524-693)

Competence protein (Competence)

(191-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

42.025

95.119

0.4