Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H9L11_RS03855 Genome accession   NZ_CP060589
Coordinates   830687..831730 (-) Length   347 a.a.
NCBI ID   WP_005380874.1    Uniprot ID   A0A2I3C9C1
Organism   Vibrio sp. sp1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 825677..845929 830687..831730 within 0


Gene organization within MGE regions


Location: 825677..845929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L11_RS03835 (H9L11_03835) csrA 825677..825874 (-) 198 WP_004415691.1 carbon storage regulator CsrA -
  H9L11_RS03840 (H9L11_03840) - 825967..827154 (-) 1188 WP_033907430.1 aspartate kinase -
  H9L11_RS03845 (H9L11_03845) alaS 827367..829949 (-) 2583 WP_033907431.1 alanine--tRNA ligase -
  H9L11_RS03850 (H9L11_03850) recX 830092..830559 (-) 468 WP_017633543.1 recombination regulator RecX -
  H9L11_RS03855 (H9L11_03855) recA 830687..831730 (-) 1044 WP_005380874.1 recombinase RecA Machinery gene
  H9L11_RS03860 (H9L11_03860) pncC 831931..832413 (-) 483 WP_017633544.1 nicotinamide-nucleotide amidase -
  H9L11_RS23665 (H9L11_03865) - 832780..834039 (+) 1260 WP_029851395.1 flagellin -
  H9L11_RS03870 (H9L11_03870) - 834110..834916 (-) 807 WP_029851397.1 hypothetical protein -
  H9L11_RS03875 (H9L11_03875) - 834916..835143 (-) 228 WP_029851398.1 AlpA family phage regulatory protein -
  H9L11_RS03880 (H9L11_03880) - 835326..836243 (+) 918 WP_029851399.1 hypothetical protein -
  H9L11_RS03885 (H9L11_03885) - 836545..836727 (+) 183 WP_205390997.1 hypothetical protein -
  H9L11_RS03890 (H9L11_03890) istA 836782..837801 (+) 1020 WP_205390739.1 IS21 family transposase -
  H9L11_RS03895 (H9L11_03895) istB 837798..838592 (+) 795 WP_205390738.1 IS21-like element helper ATPase IstB -
  H9L11_RS03900 (H9L11_03900) - 838674..839585 (+) 912 WP_205390998.1 hypothetical protein -
  H9L11_RS03905 (H9L11_03905) - 839817..841091 (-) 1275 WP_205390999.1 site-specific integrase -
  H9L11_RS03910 (H9L11_03910) mutS 841265..843856 (+) 2592 WP_205391000.1 DNA mismatch repair protein MutS -
  H9L11_RS03915 (H9L11_03915) rpoS 843939..844925 (-) 987 WP_005380887.1 RNA polymerase sigma factor RpoS Regulator
  H9L11_RS03920 (H9L11_03920) - 845006..845929 (-) 924 WP_033907434.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37290.75 Da        Isoelectric Point: 5.0618

>NTDB_id=476754 H9L11_RS03855 WP_005380874.1 830687..831730(-) (recA) [Vibrio sp. sp1]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGAWYSYNGDKIGQGKANACNYLREHPEVAKTIDT
KLREMLLAPALAEAPEAGEAPEQAEEF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=476754 H9L11_RS03855 WP_005380874.1 830687..831730(-) (recA) [Vibrio sp. sp1]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATCATGCG
CCTTGGTGATAACCGCGCAATGGACGTAGAAACCATCTCAACGGGTTCTCTTTCTCTTGATATCGCTTTGGGTGCTGGTG
GTCTACCAATGGGTCGTATCGTAGAAATCTACGGCCCAGAATCTTCAGGTAAAACAACATTAACCCTTGAGCTTATTGCT
GCTGCGCAACGTGAAGGCAAAACGTGTGCGTTTATCGATGCAGAGCACGCTCTAGATCCTGTATACGCGAAGAAACTTGG
CGTAGATATCGATGCATTGCTGGTTTCTCAGCCAGACACAGGTGAGCAAGCGCTAGAGATCTGTGACGCACTTGCACGTT
CTGGTGCTATCGATGTTATGGTTGTCGACTCTGTTGCAGCGCTAACACCGAAAGCAGAAATCGAAGGCGAAATGGGCGAT
AGCCACATGGGTCTGCAAGCACGTATGCTTTCTCAAGCAATGCGTAAGCTAACGGGTAACCTAAAGCAGTCTAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACAACAACAGGTGGTAACGCAC
TTAAGTTCTACGCTTCTGTTCGTCTAGATATCCGTCGTACTGGCGCAATCAAAGAAGGTGACGAAGTCGTAGGTAACGAA
ACGCGCATCAAAGTTGTTAAGAATAAGATTGCAGCACCATTTAAAGAAGCAAACACACAAATCATGTACGGCCAAGGCTT
TAACCGCGAAGGTGAACTTGTCGATCTAGGTGTGAAGCACAAGTTAGTTGAAAAAGCCGGTGCTTGGTATAGCTACAATG
GCGATAAGATTGGTCAAGGTAAAGCGAATGCATGTAACTACCTGCGTGAGCACCCTGAAGTGGCTAAAACTATCGATACA
AAACTGCGTGAAATGTTGCTAGCGCCAGCACTTGCGGAAGCGCCTGAAGCTGGTGAAGCGCCAGAGCAAGCTGAAGAGTT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3C9C1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

95.137

94.813

0.902
  recA Vibrio cholerae O1 biovar El Tor strain E7946

95.137

94.813

0.902
  recA Acinetobacter baylyi ADP1

71.594

99.424

0.712
  recA Acinetobacter baumannii D1279779

74.924

94.236

0.706
  recA Pseudomonas stutzeri DSM 10701

74.618

94.236

0.703
  recA Glaesserella parasuis strain SC1401

70.679

93.372

0.66
  recA Neisseria gonorrhoeae MS11

65.33

100

0.657
  recA Neisseria gonorrhoeae MS11

65.33

100

0.657
  recA Neisseria gonorrhoeae strain FA1090

65.33

100

0.657
  recA Ralstonia pseudosolanacearum GMI1000

71.061

89.625

0.637
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.475

98.847

0.588
  recA Helicobacter pylori strain NCTC11637

61.774

94.236

0.582
  recA Streptococcus pneumoniae R6

62.539

93.084

0.582
  recA Streptococcus pneumoniae TIGR4

62.539

93.084

0.582
  recA Streptococcus pneumoniae D39

62.539

93.084

0.582
  recA Streptococcus pneumoniae Rx1

62.539

93.084

0.582
  recA Helicobacter pylori 26695

61.468

94.236

0.579
  recA Streptococcus mitis SK321

61.92

93.084

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

59.88

96.254

0.576
  recA Streptococcus pyogenes NZ131

61.538

93.66

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

92.507

0.573
  recA Streptococcus mitis NCTC 12261

61.61

93.084

0.573
  recA Streptococcus mutans UA159

60.923

93.66

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.682

92.507

0.571
  recA Lactococcus lactis subsp. cremoris KW2

60.991

93.084

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.159

95.965

0.568