Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   H9L11_RS03915 Genome accession   NZ_CP060589
Coordinates   843939..844925 (-) Length   328 a.a.
NCBI ID   WP_005380887.1    Uniprot ID   A0A2I3CB39
Organism   Vibrio sp. sp1     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 825677..845929 843939..844925 within 0


Gene organization within MGE regions


Location: 825677..845929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L11_RS03835 (H9L11_03835) csrA 825677..825874 (-) 198 WP_004415691.1 carbon storage regulator CsrA -
  H9L11_RS03840 (H9L11_03840) - 825967..827154 (-) 1188 WP_033907430.1 aspartate kinase -
  H9L11_RS03845 (H9L11_03845) alaS 827367..829949 (-) 2583 WP_033907431.1 alanine--tRNA ligase -
  H9L11_RS03850 (H9L11_03850) recX 830092..830559 (-) 468 WP_017633543.1 recombination regulator RecX -
  H9L11_RS03855 (H9L11_03855) recA 830687..831730 (-) 1044 WP_005380874.1 recombinase RecA Machinery gene
  H9L11_RS03860 (H9L11_03860) pncC 831931..832413 (-) 483 WP_017633544.1 nicotinamide-nucleotide amidase -
  H9L11_RS23665 (H9L11_03865) - 832780..834039 (+) 1260 WP_029851395.1 flagellin -
  H9L11_RS03870 (H9L11_03870) - 834110..834916 (-) 807 WP_029851397.1 hypothetical protein -
  H9L11_RS03875 (H9L11_03875) - 834916..835143 (-) 228 WP_029851398.1 AlpA family phage regulatory protein -
  H9L11_RS03880 (H9L11_03880) - 835326..836243 (+) 918 WP_029851399.1 hypothetical protein -
  H9L11_RS03885 (H9L11_03885) - 836545..836727 (+) 183 WP_205390997.1 hypothetical protein -
  H9L11_RS03890 (H9L11_03890) istA 836782..837801 (+) 1020 WP_205390739.1 IS21 family transposase -
  H9L11_RS03895 (H9L11_03895) istB 837798..838592 (+) 795 WP_205390738.1 IS21-like element helper ATPase IstB -
  H9L11_RS03900 (H9L11_03900) - 838674..839585 (+) 912 WP_205390998.1 hypothetical protein -
  H9L11_RS03905 (H9L11_03905) - 839817..841091 (-) 1275 WP_205390999.1 site-specific integrase -
  H9L11_RS03910 (H9L11_03910) mutS 841265..843856 (+) 2592 WP_205391000.1 DNA mismatch repair protein MutS -
  H9L11_RS03915 (H9L11_03915) rpoS 843939..844925 (-) 987 WP_005380887.1 RNA polymerase sigma factor RpoS Regulator
  H9L11_RS03920 (H9L11_03920) - 845006..845929 (-) 924 WP_033907434.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 37412.31 Da        Isoelectric Point: 4.7299

>NTDB_id=476756 H9L11_RS03915 WP_005380887.1 843939..844925(-) (rpoS) [Vibrio sp. sp1]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide


Download         Length: 987 bp        

>NTDB_id=476756 H9L11_RS03915 WP_005380887.1 843939..844925(-) (rpoS) [Vibrio sp. sp1]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACATGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(169-242)

Sigma-70 region 2 (Sigma70_r2)

(89-158)

Sigma-70, region 4 (Sigma70_r4)

(257-310)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(51-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3CB39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

83.832

100

0.854