Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | LCBD_RS05065 | Genome accession | NC_017474 |
| Coordinates | 988707..989768 (+) | Length | 353 a.a. |
| NCBI ID | WP_003598111.1 | Uniprot ID | A0A243PT23 |
| Organism | Lacticaseibacillus paracasei | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 960441..999731 | 988707..989768 | within | 0 |
Gene organization within MGE regions
Location: 960441..999731
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCBD_RS04925 (LCBD_0990) | - | 960441..961439 (-) | 999 | WP_012490951.1 | IS30 family transposase | - |
| LCBD_RS04930 (LCBD_0991) | - | 961677..963005 (-) | 1329 | WP_012491272.1 | metallophosphoesterase | - |
| LCBD_RS04935 (LCBD_0992) | - | 963196..963462 (+) | 267 | WP_003564140.1 | ACT domain-containing protein | - |
| LCBD_RS04940 (LCBD_0993) | - | 963511..964854 (+) | 1344 | WP_014951764.1 | PFL family protein | - |
| LCBD_RS04945 (LCBD_0994) | - | 964964..966019 (+) | 1056 | WP_003569473.1 | competence protein CoiA | - |
| LCBD_RS04950 (LCBD_0995) | - | 966209..966844 (-) | 636 | WP_003601677.1 | DsbA family protein | - |
| LCBD_RS04955 (LCBD_0996) | - | 966914..967507 (-) | 594 | WP_003601679.1 | CYTH domain-containing protein | - |
| LCBD_RS04960 (LCBD_0997) | - | 967701..968372 (+) | 672 | WP_003564145.1 | GTP pyrophosphokinase family protein | - |
| LCBD_RS04965 (LCBD_0998) | - | 968374..969171 (+) | 798 | WP_003564146.1 | NAD kinase | - |
| LCBD_RS04970 (LCBD_0999) | - | 969171..970073 (+) | 903 | WP_012491275.1 | RluA family pseudouridine synthase | - |
| LCBD_RS04975 (LCBD_1000) | - | 970182..971240 (-) | 1059 | WP_012491276.1 | FAD:protein FMN transferase | - |
| LCBD_RS04980 (LCBD_1001) | - | 971397..972032 (-) | 636 | WP_003569480.1 | copper homeostasis protein CutC | - |
| LCBD_RS04985 (LCBD_1002) | - | 972054..972872 (-) | 819 | WP_014566471.1 | undecaprenyl-diphosphate phosphatase | - |
| LCBD_RS04990 (LCBD_1003) | - | 973075..974115 (-) | 1041 | WP_012491278.1 | lactonase family protein | - |
| LCBD_RS04995 (LCBD_1004) | - | 974387..974764 (+) | 378 | WP_014566472.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| LCBD_RS05000 (LCBD_1005) | rpsN | 974876..975145 (-) | 270 | WP_003564153.1 | 30S ribosomal protein S14 | - |
| LCBD_RS05005 (LCBD_1006) | - | 975273..976250 (-) | 978 | WP_024109435.1 | GMP reductase | - |
| LCBD_RS05010 (LCBD_1007) | - | 976490..977437 (-) | 948 | WP_003564155.1 | magnesium transporter CorA family protein | - |
| LCBD_RS05015 (LCBD_1008) | - | 977503..978345 (+) | 843 | WP_012491280.1 | methyltransferase domain-containing protein | - |
| LCBD_RS05020 (LCBD_1009) | trmL | 978600..979109 (+) | 510 | WP_003564157.1 | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | - |
| LCBD_RS05025 (LCBD_1010) | - | 979236..979646 (+) | 411 | WP_003564159.1 | DUF1149 family protein | - |
| LCBD_RS05030 (LCBD_1011) | - | 979819..982140 (+) | 2322 | WP_003604697.1 | FtsK/SpoIIIE family DNA translocase | - |
| LCBD_RS05035 (LCBD_1012) | yfmF | 982149..983411 (+) | 1263 | WP_012491281.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| LCBD_RS05040 (LCBD_1013) | yfmH | 983408..984700 (+) | 1293 | WP_014566474.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| LCBD_RS05045 (LCBD_1014) | ymfI | 984700..985428 (+) | 729 | WP_003569514.1 | elongation factor P 5-aminopentanone reductase | - |
| LCBD_RS05050 (LCBD_1015) | - | 985515..986444 (+) | 930 | WP_003593861.1 | helix-turn-helix domain-containing protein | - |
| LCBD_RS05055 (LCBD_1016) | pgsA | 986441..987034 (+) | 594 | WP_003564171.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| LCBD_RS05060 (LCBD_1017) | cinA | 987409..988650 (+) | 1242 | WP_012491282.1 | competence/damage-inducible protein A | Machinery gene |
| LCBD_RS05065 (LCBD_1018) | recA | 988707..989768 (+) | 1062 | WP_003598111.1 | recombinase RecA | Machinery gene |
| LCBD_RS05070 (LCBD_1019) | rny | 990070..991641 (+) | 1572 | WP_003657913.1 | ribonuclease Y | - |
| LCBD_RS05075 (LCBD_1020) | - | 991735..992385 (-) | 651 | WP_012491283.1 | YigZ family protein | - |
| LCBD_RS05080 (LCBD_1021) | - | 992413..993675 (+) | 1263 | WP_016379935.1 | helicase-related protein | - |
| LCBD_RS05085 (LCBD_1022) | - | 993888..994349 (+) | 462 | WP_003583965.1 | ComF family protein | - |
| LCBD_RS05090 (LCBD_1023) | hpf | 994473..995030 (+) | 558 | WP_003569531.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| LCBD_RS05095 (LCBD_1024) | secA | 995364..997727 (+) | 2364 | WP_003578257.1 | preprotein translocase subunit SecA | - |
| LCBD_RS05100 (LCBD_1025) | prfB | 997852..998968 (+) | 1117 | WP_096772597.1 | peptide chain release factor 2 | - |
| LCBD_RS05105 (LCBD_1026) | ftsE | 999045..999731 (+) | 687 | WP_012491286.1 | cell division ATP-binding protein FtsE | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37745.94 Da Isoelectric Point: 5.8234
>NTDB_id=47454 LCBD_RS05065 WP_003598111.1 988707..989768(+) (recA) [Lacticaseibacillus paracasei]
MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTRVSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGN
RTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERIGQGRENAKTYLDNHADLQQTIK
QQVRVAYGMAAAPGRETASVSEDQPEIHQQAEV
MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTRVSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGN
RTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERIGQGRENAKTYLDNHADLQQTIK
QQVRVAYGMAAAPGRETASVSEDQPEIHQQAEV
Nucleotide
Download Length: 1062 bp
>NTDB_id=47454 LCBD_RS05065 WP_003598111.1 988707..989768(+) (recA) [Lacticaseibacillus paracasei]
ATGGCAGGAGACGAACGCCAGAAAGCATTGGATGTTGCACTGAAAAAGATTGAAAAAAATTTTGGTAAAGGCGCGATTAT
GCGAATGGGTGCTAAGGCGGACACGCGCGTTTCCGTTGTCTCTAGCGGCTCACTTGCCGTTGATGATGCACTTGGTGTTG
GGGGCTTTCCGCGCGGACGAATTGTCGAAATTTATGGACCGGAAAGTTCCGGCAAAACAACCGTCGCGCTGCATGCTGTT
GCTGAAGTGCAGAAGCAAGGCGGTACTGCCGCCTATATTGATGCCGAGAATGCGATGGATCCCAAGTACGCAACTGCTTT
GGGCGTCAATATTGACGAATTATTGCTCTCCCAGCCAGACACAGGCGAACAAGGGCTGGAGATTGCTGATGAACTAGTCG
CGTCTGGTGCCATTGATATTGTGGTGATTGATTCAGTTGCTGCTTTGGTGCCGCGGGCTGAGATTGAGGGCGATATGGGG
GATGCCCATGTTGGCTTGCAAGCCCGATTAATGTCACAGGCGTTACGTAAGTTATCCGGTTCCATCAATAAGACAAAAAC
GATTGCTTTATTCATTAATCAGATTCGTGAGAAAGTCGGGATCATTTTTGGGAGTCCGGAAACGACACCAGGTGGTCGCG
CATTGAAGTTTTATGCGACTGTTCGGTTAGAAATCCGGCGGTCGGAACAGATCAAGACAGGCGCAGATGTCGTCGGCAAT
CGCACTAAAATCAAAGTGGTCAAGAATAAGGTGGCACCGCCTTTTCGAACAGCAATTGTGGATATCATGTATGGCCAAGG
CATTTCGCAAACTGGCGAACTTGTCGACATGGCCGTTGAGAGAGATATTGTTGAAAAAGCAGGGTCATGGTACGCGTATC
AAGGTGAACGCATCGGCCAAGGTCGCGAAAACGCTAAGACATATCTTGATAACCACGCTGATCTTCAGCAGACGATTAAA
CAACAGGTTCGCGTGGCTTATGGTATGGCAGCCGCACCTGGTCGGGAGACGGCTTCGGTCAGTGAAGATCAACCCGAAAT
ACATCAACAGGCTGAAGTATGA
ATGGCAGGAGACGAACGCCAGAAAGCATTGGATGTTGCACTGAAAAAGATTGAAAAAAATTTTGGTAAAGGCGCGATTAT
GCGAATGGGTGCTAAGGCGGACACGCGCGTTTCCGTTGTCTCTAGCGGCTCACTTGCCGTTGATGATGCACTTGGTGTTG
GGGGCTTTCCGCGCGGACGAATTGTCGAAATTTATGGACCGGAAAGTTCCGGCAAAACAACCGTCGCGCTGCATGCTGTT
GCTGAAGTGCAGAAGCAAGGCGGTACTGCCGCCTATATTGATGCCGAGAATGCGATGGATCCCAAGTACGCAACTGCTTT
GGGCGTCAATATTGACGAATTATTGCTCTCCCAGCCAGACACAGGCGAACAAGGGCTGGAGATTGCTGATGAACTAGTCG
CGTCTGGTGCCATTGATATTGTGGTGATTGATTCAGTTGCTGCTTTGGTGCCGCGGGCTGAGATTGAGGGCGATATGGGG
GATGCCCATGTTGGCTTGCAAGCCCGATTAATGTCACAGGCGTTACGTAAGTTATCCGGTTCCATCAATAAGACAAAAAC
GATTGCTTTATTCATTAATCAGATTCGTGAGAAAGTCGGGATCATTTTTGGGAGTCCGGAAACGACACCAGGTGGTCGCG
CATTGAAGTTTTATGCGACTGTTCGGTTAGAAATCCGGCGGTCGGAACAGATCAAGACAGGCGCAGATGTCGTCGGCAAT
CGCACTAAAATCAAAGTGGTCAAGAATAAGGTGGCACCGCCTTTTCGAACAGCAATTGTGGATATCATGTATGGCCAAGG
CATTTCGCAAACTGGCGAACTTGTCGACATGGCCGTTGAGAGAGATATTGTTGAAAAAGCAGGGTCATGGTACGCGTATC
AAGGTGAACGCATCGGCCAAGGTCGCGAAAACGCTAAGACATATCTTGATAACCACGCTGATCTTCAGCAGACGATTAAA
CAACAGGTTCGCGTGGCTTATGGTATGGCAGCCGCACCTGGTCGGGAGACGGCTTCGGTCAGTGAAGATCAACCCGAAAT
ACATCAACAGGCTGAAGTATGA
Similar proteins
Only experimentally validated proteins are listed.