Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H5404_RS21320 Genome accession   NZ_CP060088
Coordinates   2885019..2886059 (-) Length   346 a.a.
NCBI ID   WP_025789425.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TJA114     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2880019..2891059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5404_RS21300 (H5404_21300) csrA 2880023..2880220 (-) 198 WP_004415691.1 carbon storage regulator CsrA -
  H5404_RS21305 (H5404_21305) - 2880313..2881500 (-) 1188 WP_140219971.1 aspartate kinase -
  H5404_RS21310 (H5404_21310) alaS 2881703..2884285 (-) 2583 WP_140219973.1 alanine--tRNA ligase -
  H5404_RS21315 (H5404_21315) recX 2884428..2884895 (-) 468 WP_005455548.1 recombination regulator RecX -
  H5404_RS21320 (H5404_21320) recA 2885019..2886059 (-) 1041 WP_025789425.1 recombinase RecA Machinery gene
  H5404_RS21325 (H5404_21325) pncC 2886260..2886742 (-) 483 WP_021450025.1 nicotinamide-nucleotide amidase -
  H5404_RS21330 (H5404_21330) mutS 2886827..2889388 (+) 2562 WP_185215504.1 DNA mismatch repair protein MutS -
  H5404_RS21335 (H5404_21335) rpoS 2889467..2890456 (-) 990 WP_005478537.1 RNA polymerase sigma factor RpoS Regulator

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37303.80 Da        Isoelectric Point: 5.3322

>NTDB_id=473898 H5404_RS21320 WP_025789425.1 2885019..2886059(-) (recA) [Vibrio parahaemolyticus strain TJA114]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGKANACNYLREHPEIAKTIDT
KLREMLLSPAQPEAPAAGEKPEQEEF

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=473898 H5404_RS21320 WP_025789425.1 2885019..2886059(-) (recA) [Vibrio parahaemolyticus strain TJA114]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATCATGCG
CCTTGGTGATAACCGCGCAATGGATGTAGAAACCATTTCAACGGGTTCGCTTTCTCTTGATATCGCTTTGGGTGCTGGTG
GTCTACCAATGGGGCGTATCGTTGAGATTTACGGTCCAGAATCTTCAGGTAAAACAACACTAACTCTTGAACTTATTGCT
GCTGCGCAACGTGAAGGTAAAACTTGTGCGTTTATCGATGCTGAGCACGCGTTGGATCCTGTGTACGCTAAAAAGCTTGG
TGTTGATATCGATGCACTATTGGTTTCTCAACCAGACACTGGTGAGCAAGCTCTAGAGATTTGTGATGCATTAGCTCGCT
CTGGCGCAATCGACGTAATGGTTGTTGACTCTGTTGCCGCTCTAACACCTAAAGCTGAGATCGAAGGCGAAATGGGTGAT
AGCCACATGGGTTTGCAAGCTCGTATGCTTTCTCAAGCAATGCGTAAGCTTACAGGTAACCTGAAACAGTCTAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCTGAAACGACTACTGGCGGTAACGCGC
TTAAGTTTTACGCTTCTGTTCGTTTAGATATCCGTCGTACTGGCGCAATCAAAGAAGGCGATGAAGTTGTAGGTAACGAA
ACGCGTATCAAAGTGGTTAAGAACAAGATTGCAGCACCATTTAAAGAAGCAAACACGCAAATCATGTATGGCCAAGGCTT
TAACCGTGAAGGTGAGTTGATTGACTTAGGCGTGAAGCACAAGCTAGTAGAAAAAGCCGGTGCTTGGTACAGCTACAATG
GCGATAAGATTGGTCAAGGTAAAGCAAACGCTTGTAACTACCTGCGTGAGCATCCAGAAATCGCGAAGACAATCGATACC
AAACTGCGTGAAATGCTACTTTCTCCAGCTCAACCAGAAGCACCTGCTGCCGGTGAGAAGCCTGAGCAAGAAGAGTTTTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

95.745

95.087

0.91
  recA Vibrio cholerae O1 biovar El Tor strain E7946

95.745

95.087

0.91
  recA Pseudomonas stutzeri DSM 10701

72.941

98.266

0.717
  recA Acinetobacter baylyi ADP1

71.676

100

0.717
  recA Acinetobacter baumannii D1279779

74.695

94.798

0.708
  recA Glaesserella parasuis strain SC1401

70.859

94.22

0.668
  recA Neisseria gonorrhoeae MS11

65.903

100

0.665
  recA Neisseria gonorrhoeae MS11

65.903

100

0.665
  recA Neisseria gonorrhoeae strain FA1090

65.903

100

0.665
  recA Ralstonia pseudosolanacearum GMI1000

71.383

89.884

0.642
  recA Helicobacter pylori strain NCTC11637

60.588

98.266

0.595
  recA Helicobacter pylori 26695

60.294

98.266

0.592
  recA Streptococcus pneumoniae Rx1

62.848

93.353

0.587
  recA Streptococcus pneumoniae R6

62.848

93.353

0.587
  recA Streptococcus pneumoniae D39

62.848

93.353

0.587
  recA Streptococcus pneumoniae TIGR4

62.848

93.353

0.587
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

92.197

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

92.775

0.581
  recA Streptococcus mitis NCTC 12261

61.92

93.353

0.578
  recA Streptococcus pyogenes NZ131

61.231

93.931

0.575
  recA Streptococcus mitis SK321

61.61

93.353

0.575
  recA Streptococcus mutans UA159

60.923

93.931

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

92.775

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.215

95.665

0.566
  recA Lactococcus lactis subsp. cremoris KW2

60.681

93.353

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

60.748

92.775

0.564