Detailed information NTG0473900

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H5404_RS21335
• Genome accession: NZ_CP060088
• Coordinates: 2889467..2890456 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain TJA114
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2884467..2895456

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H5404_RS21320 (H5404_21320)	recA	2885019..2886059 (-)	1041	WP_025789425.1	recombinase RecA	Machinery gene
H5404_RS21325 (H5404_21325)	pncC	2886260..2886742 (-)	483	WP_021450025.1	nicotinamide-nucleotide amidase	-
H5404_RS21330 (H5404_21330)	mutS	2886827..2889388 (+)	2562	WP_185215504.1	DNA mismatch repair protein MutS	-
H5404_RS21335 (H5404_21335)	rpoS	2889467..2890456 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
H5404_RS21340 (H5404_21340)	-	2890537..2891460 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
H5404_RS21345 (H5404_21345)	-	2891475..2892101 (-)	627	WP_140219731.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
H5404_RS21350 (H5404_21350)	surE	2892101..2892877 (-)	777	WP_005478553.1	5'/3'-nucleotidase SurE	-
H5404_RS21355 (H5404_21355)	truD	2892877..2893920 (-)	1044	WP_021450029.1	tRNA pseudouridine(13) synthase TruD	-
H5404_RS21360 (H5404_21360)	ispF	2893967..2894443 (-)	477	WP_005455572.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H5404_RS21365 (H5404_21365)	ispD	2894461..2895165 (-)	705	WP_140219727.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H5404_RS21370 (H5404_21370)	ftsB	2895167..2895448 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=473900 H5404_RS21335 WP_005478537.1 2889467..2890456(-) (rpoS) [Vibrio parahaemolyticus strain TJA114]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=473900 H5404_RS21335 WP_005478537.1 2889467..2890456(-) (rpoS) [Vibrio parahaemolyticus strain TJA114]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTTGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851