Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H6S61_RS06255 Genome accession   NZ_CP060047
Coordinates   1234631..1235680 (-) Length   349 a.a.
NCBI ID   WP_038941440.1    Uniprot ID   A0A087IIA3
Organism   Vibrio vulnificus strain 2497-87     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1229631..1240680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H6S61_RS06240 (H6S61_06240) - 1229913..1231100 (-) 1188 WP_038941435.1 aspartate kinase -
  H6S61_RS06245 (H6S61_06245) alaS 1231297..1233879 (-) 2583 WP_072608933.1 alanine--tRNA ligase -
  H6S61_RS06250 (H6S61_06250) recX 1234060..1234521 (-) 462 WP_038941439.1 recombination regulator RecX -
  H6S61_RS06255 (H6S61_06255) recA 1234631..1235680 (-) 1050 WP_038941440.1 recombinase RecA Machinery gene
  H6S61_RS06260 (H6S61_06260) pncC 1235813..1236316 (-) 504 WP_017420280.1 nicotinamide-nucleotide amidase -
  H6S61_RS06265 (H6S61_06265) mutS 1236400..1238961 (+) 2562 WP_038941441.1 DNA mismatch repair protein MutS -
  H6S61_RS06270 (H6S61_06270) rpoS 1239037..1240029 (-) 993 WP_017420278.1 RNA polymerase sigma factor RpoS Regulator

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37710.27 Da        Isoelectric Point: 4.8857

>NTDB_id=473537 H6S61_RS06255 WP_038941440.1 1234631..1235680(-) (recA) [Vibrio vulnificus strain 2497-87]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKCKLIEKSGAWYSYNGDKIGQGKANACKYLKENVDVAKVLDT
KLRELLLSSANINDESAELVEEMPEQEEF

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=473537 H6S61_RS06255 WP_038941440.1 1234631..1235680(-) (recA) [Vibrio vulnificus strain 2497-87]
ATGGACGAGAACAAACAGAAGGCACTGGCCGCCGCGCTAGGTCAAATTGAAAAGCAGTTCGGTAAAGGTTCAATCATGCG
CCTAGGTGACAACCGTGCGATGGATGTTGAAACCATCTCGACAGGTTCACTATCTCTGGATATTGCGCTGGGTGCTGGTG
GCTTACCAATGGGCCGTATCGTTGAAATTTTTGGTCCAGAATCTTCAGGTAAAACCACGTTGACCCTTGAGCTGATCGCT
GCGGCTCAACGTGAAGGCAAAACTTGTGCGTTTATCGATGCTGAGCACGCGTTAGATCCTGTGTATGCGAAGAAACTTGG
CGTTAATATCGACCAATTGTTGGTATCTCAGCCTGATACTGGTGAACAAGCATTGGAAATCTGTGATGCTCTTGCTCGCT
CAGGTGCGGTTGACGTTATTGTTGTCGACTCTGTGGCCGCATTGACACCAAAGGCAGAAATCGAAGGTGAGATGGGCGAT
TCGCACATGGGTCTTCAAGCTCGTATGCTCTCTCAAGCGATGCGTAAGTTAACGGGGAACCTAAAACAGTCTAACTGTAT
GTGTATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTTGGTAATCCAGAAACCACAACAGGTGGTAACGCAC
TGAAATTCTACGCTTCTGTTCGTCTTGATATTCGCCGTACTGGTGCGATCAAAGAAGGTGATGAGGTAGTGGGTAATGAA
ACGCGTATCAAAGTGGTGAAGAATAAGATCGCTGCGCCGTTTAAAGAAGCCAACACTCAAATTATGTACGGCCAGGGCTT
TAACCGTGAAGGTGAACTGATTGACCTAGGCGTGAAATGTAAGCTGATTGAAAAATCAGGTGCTTGGTATAGCTATAACG
GCGACAAAATTGGCCAAGGTAAAGCGAACGCATGTAAGTACCTGAAAGAAAACGTAGATGTAGCAAAAGTACTGGATACA
AAATTGCGTGAATTGTTGCTTTCTTCAGCAAACATCAACGATGAATCGGCAGAGTTAGTCGAAGAAATGCCAGAGCAAGA
AGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A087IIA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

95.482

95.129

0.908
  recA Vibrio cholerae O1 biovar El Tor strain E7946

95.482

95.129

0.908
  recA Pseudomonas stutzeri DSM 10701

75

95.129

0.713
  recA Glaesserella parasuis strain SC1401

69.492

100

0.705
  recA Acinetobacter baylyi ADP1

70.145

98.854

0.693
  recA Acinetobacter baumannii D1279779

72.948

94.269

0.688
  recA Neisseria gonorrhoeae MS11

69.018

93.41

0.645
  recA Neisseria gonorrhoeae MS11

69.018

93.41

0.645
  recA Neisseria gonorrhoeae strain FA1090

69.018

93.41

0.645
  recA Ralstonia pseudosolanacearum GMI1000

71.061

89.112

0.633
  recA Helicobacter pylori strain NCTC11637

59.884

98.567

0.59
  recA Helicobacter pylori 26695

59.593

98.567

0.587
  recA Streptococcus pneumoniae Rx1

58.571

100

0.587
  recA Streptococcus pneumoniae R6

58.571

100

0.587
  recA Streptococcus pneumoniae D39

58.571

100

0.587
  recA Streptococcus pneumoniae TIGR4

58.571

100

0.587
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.241

90.544

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

91.977

0.582
  recA Streptococcus mitis SK321

61.92

92.55

0.573
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

94.842

0.573
  recA Lactococcus lactis subsp. cremoris KW2

61.61

92.55

0.57
  recA Streptococcus mitis NCTC 12261

61.61

92.55

0.57
  recA Latilactobacillus sakei subsp. sakei 23K

61.682

91.977

0.567
  recA Streptococcus pyogenes NZ131

60.615

93.123

0.564
  recA Streptococcus mutans UA159

60.615

93.123

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.258

88.825

0.553