Detailed information NTG0473539

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H6S61_RS06270
• Genome accession: NZ_CP060047
• Coordinates: 1239037..1240029 (-)
• Length: 330 a.a.
• NCBI ID: WP_017420278.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain 2497-87
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1234037..1245029

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H6S61_RS06250 (H6S61_06250)	recX	1234060..1234521 (-)	462	WP_038941439.1	recombination regulator RecX	-
H6S61_RS06255 (H6S61_06255)	recA	1234631..1235680 (-)	1050	WP_038941440.1	recombinase RecA	Machinery gene
H6S61_RS06260 (H6S61_06260)	pncC	1235813..1236316 (-)	504	WP_017420280.1	nicotinamide-nucleotide amidase	-
H6S61_RS06265 (H6S61_06265)	mutS	1236400..1238961 (+)	2562	WP_038941441.1	DNA mismatch repair protein MutS	-
H6S61_RS06270 (H6S61_06270)	rpoS	1239037..1240029 (-)	993	WP_017420278.1	RNA polymerase sigma factor RpoS	Regulator
H6S61_RS06275 (H6S61_06275)	-	1240110..1241006 (-)	897	WP_185892273.1	peptidoglycan DD-metalloendopeptidase family protein	-
H6S61_RS06280 (H6S61_06280)	-	1241050..1241676 (-)	627	WP_017420276.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
H6S61_RS06285 (H6S61_06285)	surE	1241679..1242446 (-)	768	WP_017420275.1	5'/3'-nucleotidase SurE	-
H6S61_RS06290 (H6S61_06290)	truD	1242452..1243495 (-)	1044	WP_185891876.1	tRNA pseudouridine(13) synthase TruD	-
H6S61_RS06295 (H6S61_06295)	ispF	1243537..1244013 (-)	477	WP_017420273.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H6S61_RS06300 (H6S61_06300)	ispD	1244010..1244723 (-)	714	WP_017420272.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H6S61_RS06305 (H6S61_06305)	ftsB	1244723..1245004 (-)	282	WP_017420271.1	cell division protein FtsB	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38011.07 Da
• Isoelectric Point: 4.4761

>NTDB_id=473539 H6S61_RS06270 WP_017420278.1 1239037..1240029(-) (rpoS) [Vibrio vulnificus strain 2497-87]
MSISNTVTKVKDLDVNQMDDDFNDDIEMNEKEDLTEEKVTLREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide

• Length: 993 bp

>NTDB_id=473539 H6S61_RS06270 WP_017420278.1 1239037..1240029(-) (rpoS) [Vibrio vulnificus strain 2497-87]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAGATCTCGATGTTAATCAGATGGATGATGATTTTAACGACGATATCGA
GATGAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCACACTTCGCGAGGAGTTTGACGCCAGCAACAAGAGCTTAGATG
CGACACAGCTCTATCTAGGAGAAATTGGCTTTTCTCCACTATTAACCGCAGAAGAAGAAGTGCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCCGCGCGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCCCGCCGTTACAG
TAATCGCGGTCTTGCACTGCTTGATTTGATTGAAGAGGGTAACCTTGGTTTGATCCGTGCGGTTGAGAAATTCGATCCTG
AGCGTGGTTTTCGCTTCTCGACTTACGCAACATGGTGGATTCGCCAAACCATCGAACGTGCTTTAATGAATCAGACTCGA
ACCATCCGTTTACCTATCCATGTTGTTAAAGAGCTGAACATTTATCTACGCACGGCGCGTGAGCTTTCTCAAAAACTCGA
TCATGAGCCAACCGCTGAAGAGATCGCTGCGCAACTGGATATTCCGGTTGACGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGTATTAGTTCTGTTGATACGCCGATTGGTGGAGATGGAGAGAAGGCGTTATTAGATATTATTCCTGATGCAAACAAC
TCTGACCCAGAGGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCAAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGCTATGAGCCTTCAACACTGGAAGAGGTTGGACAAGAGATTGGTT
TAACTCGTGAGCGAGTGCGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTCTGATCAAACAAGGTCTGAAT
ATGGAAAACTTGTTTGATATCGATATGGATTGA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (91-160)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70 region 3 (Sigma70_r3) (171-244)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.602	100	0.833