Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H3M12_RS10780 Genome accession   NZ_CP059603
Coordinates   2298598..2299761 (-) Length   387 a.a.
NCBI ID   WP_233449178.1    Uniprot ID   -
Organism   Levilactobacillus suantsaii strain CBA3634     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2293598..2304761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3M12_RS10770 (H3M12_10770) - 2295866..2296663 (-) 798 WP_129031273.1 TIGR00282 family metallophosphoesterase -
  H3M12_RS10775 (H3M12_10775) rny 2296779..2298338 (-) 1560 WP_129031274.1 ribonuclease Y -
  H3M12_RS10780 (H3M12_10780) recA 2298598..2299761 (-) 1164 WP_233449178.1 recombinase RecA Machinery gene
  H3M12_RS10785 (H3M12_10785) cinA 2299854..2301107 (-) 1254 WP_129031275.1 competence/damage-inducible protein A Machinery gene
  H3M12_RS10790 (H3M12_10790) pgsA 2301248..2301835 (-) 588 WP_129031276.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  H3M12_RS10795 (H3M12_10795) - 2301917..2302858 (-) 942 WP_129031277.1 helix-turn-helix domain-containing protein -
  H3M12_RS10800 (H3M12_10800) yfmH 2302961..2304253 (-) 1293 WP_404819999.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 41256.81 Da        Isoelectric Point: 7.3950

>NTDB_id=471247 H3M12_RS10780 WP_233449178.1 2298598..2299761(-) (recA) [Levilactobacillus suantsaii strain CBA3634]
MADERQAALDKALKKIEKDFGKGSIMRMGDDAKTQVLTVPSGSLALDVALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQKRGGTAAYIDAENALDPAYATALGVDIDNLLLSQPDTGEQGLQITDALISSGAVDIVVIDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPEVTPGGRALKFYSTIRLEIRRAEQIKNGTDVIGNR
TRIKVVKNKVAPPFKKAEVDIMYGQGISQTGELLDMAVEKDIVDKSGSWYSYGEDRIGQGRENAKQYIADHPDMMAEVNQ
RVRKAYGVADEDANDDEAAGKSKAKTKDDAKSTKSATKTADKAAATKGTAKPDTTPGATVIQPHSTK

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=471247 H3M12_RS10780 WP_233449178.1 2298598..2299761(-) (recA) [Levilactobacillus suantsaii strain CBA3634]
ATGGCTGACGAACGACAAGCGGCGTTAGATAAAGCGCTGAAGAAGATCGAAAAAGATTTCGGTAAGGGCTCCATCATGCG
GATGGGTGACGATGCCAAGACACAAGTCTTGACGGTGCCATCTGGCTCGTTGGCTTTGGACGTGGCCTTAGGTGTCGGGG
GTTACCCACGGGGCCGAATCGTTGAGATTTACGGTCCTGAATCATCTGGGAAAACGACCGTTGCCTTACACGCGGTAGCC
GAAGTGCAAAAGCGCGGCGGTACGGCGGCCTACATCGATGCCGAAAATGCCTTGGATCCCGCCTATGCGACGGCTCTCGG
GGTAGATATTGACAATCTCTTGCTGTCTCAACCGGATACCGGAGAACAAGGGTTACAGATTACGGATGCGCTGATTTCTT
CGGGAGCGGTCGACATCGTGGTCATTGACTCCGTGGCAGCCCTGGTTCCACGGGCTGAAATCGAAGGCGAAATGGGTGAC
GCCCACGTGGGGTTACAGGCCCGGTTGATGTCCCAAGCACTCCGGAAACTATCCGGGACCATCAACAAGACCAAGACCAT
TGCCCTCTTTATCAACCAGATTCGGGAAAAAGTTGGGGTCATGTTTGGGAACCCAGAAGTTACGCCCGGTGGTCGGGCTT
TGAAGTTCTATTCGACGATTCGCCTGGAGATTCGGCGGGCCGAACAGATCAAGAACGGCACGGACGTGATTGGGAACCGG
ACCCGGATCAAGGTCGTGAAGAACAAGGTTGCGCCGCCGTTTAAGAAAGCCGAGGTCGACATCATGTATGGCCAAGGAAT
TTCCCAGACGGGTGAATTGCTCGACATGGCGGTCGAAAAGGACATCGTGGACAAGAGTGGGTCCTGGTATTCTTACGGTG
AAGACCGGATTGGTCAAGGCCGCGAGAACGCTAAGCAGTATATAGCGGACCACCCGGACATGATGGCTGAGGTCAACCAA
CGGGTTCGTAAGGCCTACGGGGTGGCTGATGAAGACGCCAATGACGATGAAGCAGCGGGCAAGTCCAAGGCAAAGACCAA
GGACGACGCTAAGTCAACAAAGTCGGCAACCAAGACAGCCGATAAAGCAGCTGCGACTAAGGGGACAGCCAAACCGGATA
CAACGCCTGGTGCGACGGTGATTCAACCCCATTCAACCAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

86.89

84.755

0.736
  recA Bacillus subtilis subsp. subtilis str. 168

74.085

84.755

0.628
  recA Streptococcus mitis NCTC 12261

67.442

88.889

0.599
  recA Streptococcus pneumoniae R6

65.909

90.956

0.599
  recA Streptococcus pneumoniae Rx1

65.909

90.956

0.599
  recA Streptococcus pneumoniae D39

65.909

90.956

0.599
  recA Streptococcus pneumoniae TIGR4

65.909

90.956

0.599
  recA Streptococcus mutans UA159

66.379

89.922

0.597
  recA Streptococcus mitis SK321

69.184

85.53

0.592
  recA Streptococcus pyogenes NZ131

68.882

85.53

0.589
  recA Lactococcus lactis subsp. cremoris KW2

68.373

85.788

0.587
  recA Ralstonia pseudosolanacearum GMI1000

63.898

80.879

0.517
  recA Neisseria gonorrhoeae MS11

60.79

85.013

0.517
  recA Neisseria gonorrhoeae strain FA1090

60.79

85.013

0.517
  recA Neisseria gonorrhoeae MS11

60.79

85.013

0.517
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.308

83.979

0.506
  recA Acinetobacter baylyi ADP1

57.817

87.597

0.506
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.185

83.721

0.504
  recA Vibrio cholerae strain A1552

60.185

83.721

0.504
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.146

84.755

0.501
  recA Pseudomonas stutzeri DSM 10701

58.824

83.463

0.491
  recA Acinetobacter baumannii D1279779

58.642

83.721

0.491
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.231

85.013

0.478
  recA Glaesserella parasuis strain SC1401

57.632

82.946

0.478
  recA Helicobacter pylori strain NCTC11637

55.758

85.271

0.475
  recA Helicobacter pylori 26695

55.758

85.271

0.475