Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   H3M12_RS10785 Genome accession   NZ_CP059603
Coordinates   2299854..2301107 (-) Length   417 a.a.
NCBI ID   WP_129031275.1    Uniprot ID   A0A4Q0VM49
Organism   Levilactobacillus suantsaii strain CBA3634     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 2294854..2306107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3M12_RS10770 (H3M12_10770) - 2295866..2296663 (-) 798 WP_129031273.1 TIGR00282 family metallophosphoesterase -
  H3M12_RS10775 (H3M12_10775) rny 2296779..2298338 (-) 1560 WP_129031274.1 ribonuclease Y -
  H3M12_RS10780 (H3M12_10780) recA 2298598..2299761 (-) 1164 WP_233449178.1 recombinase RecA Machinery gene
  H3M12_RS10785 (H3M12_10785) cinA 2299854..2301107 (-) 1254 WP_129031275.1 competence/damage-inducible protein A Machinery gene
  H3M12_RS10790 (H3M12_10790) pgsA 2301248..2301835 (-) 588 WP_129031276.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  H3M12_RS10795 (H3M12_10795) - 2301917..2302858 (-) 942 WP_129031277.1 helix-turn-helix domain-containing protein -
  H3M12_RS10800 (H3M12_10800) yfmH 2302961..2304253 (-) 1293 WP_404819999.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  H3M12_RS10805 (H3M12_10805) yfmF 2304246..2305298 (-) 1053 WP_233449179.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  H3M12_RS12940 - 2305337..2305525 (-) 189 WP_233449180.1 hypothetical protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 44764.97 Da        Isoelectric Point: 6.4207

>NTDB_id=471248 H3M12_RS10785 WP_129031275.1 2299854..2301107(-) (cinA) [Levilactobacillus suantsaii strain CBA3634]
MQAEIIAVGTEILLGQVVDTNSAFIARELAGAGIEVYYHSLVGDNADRLTGVVKQARSRSDLVVISGGLGPTKDDLTKQT
VAHLLGVKLVENEAAMTKIKNHFATTGKPLTPNNRLQALYLAGSQPLKNSTGMAVGAFYQAPDDEADMLLLPGPPSEMQP
MMTHEAVPALRAAYQRHEYLTSRVLRFFGIGESQLTTKLGDLIEHQTNPTIASYAKRNEVTLRLTASTTGSAEAQTLLDQ
MTATIKERVGDYLYGYGDDNSLANVVVQRLIDQHLTITGAESLTAGEFQSTIGSIPGVSAVFPGGFVTYANRAKHDLLGI
PQRIIDNDGVVSEATAKEMAERSRKLLDTDLALSFTGVAGPDSLEGQPAGTVWLGLAQRGQAPQAKLMHFAGTRGDIRMR
SVLTGLDWLRRLIPAAK

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=471248 H3M12_RS10785 WP_129031275.1 2299854..2301107(-) (cinA) [Levilactobacillus suantsaii strain CBA3634]
ATGCAAGCAGAGATTATTGCAGTGGGAACGGAAATTTTATTAGGGCAGGTCGTCGATACTAATTCGGCGTTCATTGCCCG
TGAACTGGCAGGAGCCGGGATTGAGGTCTATTATCATTCCCTAGTCGGCGATAATGCGGACCGGTTGACCGGTGTGGTGA
AACAGGCACGTTCGCGCAGTGATTTAGTCGTCATCAGTGGTGGCTTGGGTCCCACGAAAGATGATTTGACCAAACAGACT
GTTGCCCACTTGCTGGGCGTGAAGCTAGTTGAAAACGAAGCGGCCATGACGAAGATTAAAAACCACTTTGCGACGACTGG
TAAACCCTTGACGCCGAACAATCGCCTTCAAGCACTGTATCTAGCAGGGAGTCAACCCCTGAAGAACAGTACGGGGATGG
CCGTGGGGGCCTTTTACCAGGCTCCGGATGACGAGGCCGACATGTTACTGTTGCCCGGTCCACCAAGTGAGATGCAACCG
ATGATGACGCACGAAGCCGTGCCAGCGTTACGAGCGGCTTACCAACGCCACGAATACCTAACGTCGCGGGTCCTCCGTTT
CTTTGGTATCGGGGAGAGTCAGCTGACCACTAAGTTGGGCGACCTCATCGAGCACCAGACTAATCCGACTATTGCCTCCT
ACGCCAAGCGCAACGAGGTAACGTTGCGTTTGACGGCCAGCACTACGGGAAGTGCTGAAGCGCAGACGTTGCTCGACCAA
ATGACGGCCACCATCAAGGAACGAGTCGGTGACTACCTGTATGGGTACGGCGACGACAATAGTTTAGCCAACGTGGTGGT
TCAGCGATTGATCGACCAGCATCTGACGATTACCGGTGCCGAAAGCTTAACGGCTGGTGAATTCCAGAGTACTATCGGAT
CGATTCCCGGGGTGTCGGCTGTCTTTCCCGGAGGATTCGTGACCTACGCCAACCGGGCCAAACACGACTTGTTGGGGATT
CCGCAACGGATTATCGATAATGACGGGGTCGTTAGTGAAGCCACAGCTAAGGAAATGGCCGAACGGTCGCGGAAGTTGCT
CGACACGGACTTAGCCCTTAGTTTCACCGGTGTTGCGGGTCCCGATAGCCTCGAAGGGCAACCAGCGGGAACCGTTTGGT
TAGGGTTAGCCCAACGGGGACAGGCTCCCCAGGCCAAATTGATGCACTTTGCGGGCACCCGCGGAGACATCCGGATGCGA
TCGGTTTTGACCGGTTTAGATTGGTTACGGCGACTGATCCCGGCAGCAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Competence-damaged protein (CinA)

(260-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q0VM49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

49.762

100

0.501
  cinA Streptococcus mitis SK321

47.743

100

0.482
  cinA Streptococcus mitis NCTC 12261

47.743

100

0.482
  cinA Streptococcus pneumoniae TIGR4

47.031

100

0.475
  cinA Streptococcus pneumoniae Rx1

46.793

100

0.472
  cinA Streptococcus pneumoniae R6

46.793

100

0.472
  cinA Streptococcus pneumoniae D39

46.556

100

0.47
  cinA Bacillus subtilis subsp. subtilis str. 168

45.874

98.801

0.453
  cinA Streptococcus suis isolate S10

40.194

99.041

0.398