Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ToN1_RS10885 Genome accession   NZ_CP059560
Coordinates   2382610..2383644 (+) Length   344 a.a.
NCBI ID   WP_169208844.1    Uniprot ID   -
Organism   Aromatoleum petrolei strain ToN1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2377610..2388644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ToN1_RS10865 (ToN1_22280) - 2378487..2380475 (-) 1989 WP_244861027.1 flagellar assembly protein A -
  ToN1_RS10870 (ToN1_22290) thiL 2380580..2381539 (+) 960 WP_169208216.1 thiamine-phosphate kinase -
  ToN1_RS10875 (ToN1_22300) - 2381561..2382040 (+) 480 WP_210148091.1 phosphatidylglycerophosphatase A -
  ToN1_RS10880 (ToN1_22310) - 2382045..2382524 (+) 480 WP_169208845.1 nicotinamide-nucleotide amidohydrolase family protein -
  ToN1_RS10885 (ToN1_22320) recA 2382610..2383644 (+) 1035 WP_169208844.1 recombinase RecA Machinery gene
  ToN1_RS10890 (ToN1_22330) recX 2383662..2384111 (+) 450 WP_169208843.1 recombination regulator RecX -
  ToN1_RS10895 (ToN1_22340) lptB 2384098..2384820 (+) 723 WP_169208842.1 LPS export ABC transporter ATP-binding protein -
  ToN1_RS10900 (ToN1_22350) rpoN/rpoN1 2384839..2386284 (+) 1446 WP_169208841.1 RNA polymerase factor sigma-54 Machinery gene
  ToN1_RS10905 (ToN1_22360) raiA 2386314..2386640 (+) 327 WP_169208840.1 ribosome-associated translation inhibitor RaiA -
  ToN1_RS10910 (ToN1_22370) ptsN 2386777..2387262 (+) 486 WP_169208839.1 PTS IIA-like nitrogen regulatory protein PtsN -
  ToN1_RS10915 (ToN1_22380) hprK 2387231..2388172 (+) 942 WP_169208838.1 HPr(Ser) kinase/phosphatase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36732.14 Da        Isoelectric Point: 5.3392

>NTDB_id=470627 ToN1_RS10885 WP_169208844.1 2382610..2383644(+) (recA) [Aromatoleum petrolei strain ToN1]
MDDNKAKALAAALSQIEKQFGKGSIMRMGDGNVEKDIQTVSTGSLGLDIALGLGGLPRGRVVEIYGPESSGKTTLTLQVI
AEMQKLGGTAAFIDAEHALDVGYAEKLGVNITDLLISQPDTGEQALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGEMG
DQLPGLQARLMSQALRKLTANIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEVVGS
ETRCKVVKNKVAPPFKEAHFDILYGEGISREGEIIDLGVENKIVDKAGAWYSYQGDKIGQGKDNTREFLRANAALAREIE
NKVRVAVGLKELPAEPAQPAAEAA

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=470627 ToN1_RS10885 WP_169208844.1 2382610..2383644(+) (recA) [Aromatoleum petrolei strain ToN1]
ATGGACGACAACAAGGCCAAGGCCCTCGCCGCCGCGCTCTCGCAGATCGAGAAGCAGTTCGGCAAGGGTTCGATCATGCG
GATGGGCGACGGCAACGTCGAAAAGGACATCCAGACCGTCTCGACCGGCTCGCTCGGACTCGACATCGCGCTCGGCCTCG
GCGGACTGCCGCGCGGCCGCGTCGTCGAGATCTACGGTCCCGAATCGTCCGGCAAGACCACGCTGACGCTGCAGGTCATC
GCCGAGATGCAGAAGCTCGGCGGCACCGCCGCCTTCATCGACGCCGAGCACGCCCTCGACGTCGGCTACGCCGAGAAGCT
CGGCGTGAACATCACCGATCTGCTGATCTCGCAACCGGACACTGGCGAGCAGGCGCTCGAGATCGCGGACATGCTGGTGC
GTTCGGGCGGCGTCGACATCGTCGTCATCGACTCGGTCGCCGCGCTCACGCCCAAGGCCGAAATCGAAGGCGAGATGGGC
GACCAGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCACTGCGCAAGCTCACCGCCAACATCAAGCGCACCAACAC
GCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCCGAGACCACCACCGGCGGCAATG
CGCTGAAGTTCTACGCCTCCGTGCGCCTCGACATCCGCCGCACCGGCGCGATCAAGAAGGGCGACGAGGTCGTCGGCTCC
GAGACGCGCTGCAAGGTCGTCAAGAACAAGGTCGCCCCCCCGTTCAAGGAAGCGCACTTCGACATCCTCTACGGCGAGGG
CATCTCTCGCGAAGGCGAGATCATCGACCTCGGCGTCGAGAACAAGATCGTCGACAAGGCAGGCGCCTGGTATTCCTACC
AGGGCGACAAGATCGGCCAGGGCAAGGACAACACACGCGAGTTCCTGCGTGCGAACGCGGCGCTCGCACGCGAGATCGAG
AACAAGGTGCGCGTCGCGGTCGGCCTCAAGGAACTGCCGGCCGAGCCCGCGCAGCCGGCTGCCGAGGCGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.072

92.733

0.77
  recA Pseudomonas stutzeri DSM 10701

74.383

94.186

0.701
  recA Vibrio cholerae strain A1552

73.457

94.186

0.692
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.457

94.186

0.692
  recA Acinetobacter baylyi ADP1

73.148

94.186

0.689
  recA Acinetobacter baumannii D1279779

73.148

94.186

0.689
  recA Neisseria gonorrhoeae MS11

70.118

98.256

0.689
  recA Neisseria gonorrhoeae MS11

70.118

98.256

0.689
  recA Neisseria gonorrhoeae strain FA1090

70.118

98.256

0.689
  recA Glaesserella parasuis strain SC1401

70.807

93.605

0.663
  recA Helicobacter pylori strain NCTC11637

63.848

99.709

0.637
  recA Helicobacter pylori 26695

63.557

99.709

0.634
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.463

95.349

0.634
  recA Bacillus subtilis subsp. subtilis str. 168

65.35

95.64

0.625
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.35

96.221

0.619
  recA Latilactobacillus sakei subsp. sakei 23K

63.063

96.802

0.61
  recA Streptococcus mutans UA159

61.562

96.802

0.596
  recA Streptococcus mitis NCTC 12261

62.006

95.64

0.593
  recA Streptococcus mitis SK321

62.006

95.64

0.593
  recA Streptococcus pneumoniae Rx1

61.702

95.64

0.59
  recA Streptococcus pneumoniae D39

61.702

95.64

0.59
  recA Streptococcus pneumoniae R6

61.702

95.64

0.59
  recA Streptococcus pneumoniae TIGR4

61.702

95.64

0.59
  recA Streptococcus pyogenes NZ131

61.212

95.93

0.587
  recA Lactococcus lactis subsp. cremoris KW2

60.55

95.058

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.185

94.186

0.567