Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | SAA6159_RS06000 | Genome accession | NC_017338 |
| Coordinates | 1268214..1269257 (+) | Length | 347 a.a. |
| NCBI ID | WP_000368164.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus subsp. aureus JKD6159 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1188380..1273328 | 1268214..1269257 | within | 0 |
Gene organization within MGE regions
Location: 1188380..1273328
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SAA6159_RS05660 (SAA6159_01073) | pknB | 1188462..1190456 (+) | 1995 | WP_000579545.1 | serine/threonine protein kinase Stk1 | - |
| SAA6159_RS05665 (SAA6159_01074) | rsgA | 1190684..1191559 (+) | 876 | WP_000847929.1 | ribosome small subunit-dependent GTPase A | - |
| SAA6159_RS05670 (SAA6159_01075) | rpe | 1191560..1192204 (+) | 645 | WP_000164332.1 | ribulose-phosphate 3-epimerase | - |
| SAA6159_RS05675 (SAA6159_01076) | - | 1192211..1192852 (+) | 642 | WP_000547907.1 | thiamine diphosphokinase | - |
| SAA6159_RS05680 (SAA6159_01077) | rpmB | 1193233..1193421 (-) | 189 | WP_000517908.1 | 50S ribosomal protein L28 | - |
| SAA6159_RS05685 (SAA6159_01078) | - | 1193864..1194238 (+) | 375 | WP_000171418.1 | Asp23/Gls24 family envelope stress response protein | - |
| SAA6159_RS05690 (SAA6159_01079) | fakA | 1194253..1195899 (+) | 1647 | WP_000623912.1 | fatty acid kinase catalytic subunit FakA | - |
| SAA6159_RS05695 (SAA6159_01080) | recG | 1196089..1198149 (+) | 2061 | WP_001151489.1 | ATP-dependent DNA helicase RecG | - |
| SAA6159_RS05700 (SAA6159_01081) | fapR | 1198352..1198924 (+) | 573 | WP_001548538.1 | transcription factor FapR | - |
| SAA6159_RS05705 (SAA6159_01082) | plsX | 1198929..1199915 (+) | 987 | WP_000239740.1 | phosphate acyltransferase PlsX | - |
| SAA6159_RS05710 (SAA6159_01083) | fabD | 1199908..1200834 (+) | 927 | WP_084990187.1 | ACP S-malonyltransferase | - |
| SAA6159_RS05715 (SAA6159_01084) | fabG | 1200827..1201561 (+) | 735 | WP_000167269.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| SAA6159_RS05720 (SAA6159_01085) | - | 1201995..1202228 (+) | 234 | WP_000426914.1 | acyl carrier protein | - |
| SAA6159_RS05725 (SAA6159_01086) | rnc | 1202344..1203075 (+) | 732 | WP_000043237.1 | ribonuclease III | - |
| SAA6159_RS05730 (SAA6159_01087) | smc | 1203222..1206788 (+) | 3567 | WP_000262684.1 | chromosome segregation protein SMC | - |
| SAA6159_RS05735 (SAA6159_01088) | ftsY | 1206788..1208038 (+) | 1251 | WP_000007686.1 | signal recognition particle-docking protein FtsY | - |
| SAA6159_RS05740 (SAA6159_01089) | - | 1208025..1208357 (+) | 333 | WP_000531320.1 | putative DNA-binding protein | - |
| SAA6159_RS05745 (SAA6159_01090) | ffh | 1208383..1209750 (+) | 1368 | WP_000863474.1 | signal recognition particle protein | - |
| SAA6159_RS05750 (SAA6159_01091) | rpsP | 1210092..1210367 (+) | 276 | WP_000268754.1 | 30S ribosomal protein S16 | - |
| SAA6159_RS05755 (SAA6159_01092) | rimM | 1210554..1211057 (+) | 504 | WP_001261989.1 | ribosome maturation factor RimM | - |
| SAA6159_RS05760 (SAA6159_01093) | trmD | 1211057..1211794 (+) | 738 | WP_000687332.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| SAA6159_RS05765 (SAA6159_01094) | rplS | 1211897..1212247 (+) | 351 | WP_000181404.1 | 50S ribosomal protein L19 | - |
| SAA6159_RS05770 (SAA6159_01095) | - | 1212465..1213783 (-) | 1319 | Protein_1129 | ISL3-like element IS1181 family transposase | - |
| SAA6159_RS05775 (SAA6159_01097) | yfhO | 1214006..1216612 (-) | 2607 | WP_000915252.1 | lipoteichoic acid-specific glycosyltransferase YfhO | - |
| SAA6159_RS05780 (SAA6159_01098) | ylqF | 1217016..1217900 (+) | 885 | WP_000236727.1 | ribosome biogenesis GTPase YlqF | - |
| SAA6159_RS05785 (SAA6159_01099) | - | 1217884..1218651 (+) | 768 | WP_000176398.1 | ribonuclease HII | - |
| SAA6159_RS05790 (SAA6159_01100) | sucC | 1218760..1219926 (+) | 1167 | WP_001020801.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| SAA6159_RS05795 (SAA6159_01101) | sucD | 1219948..1220856 (+) | 909 | WP_000110246.1 | succinate--CoA ligase subunit alpha | - |
| SAA6159_RS05800 (SAA6159_01102) | - | 1221083..1222201 (+) | 1119 | WP_001041654.1 | LysM peptidoglycan-binding domain-containing protein | - |
| SAA6159_RS05805 (SAA6159_01103) | fmhC | 1222229..1223473 (+) | 1245 | WP_000672855.1 | FemA/FemB family glycyltransferase FmhC | - |
| SAA6159_RS05810 (SAA6159_01104) | dprA | 1223645..1224517 (+) | 873 | WP_000620180.1 | DNA-processing protein DprA | Machinery gene |
| SAA6159_RS05815 (SAA6159_01105) | topA | 1224691..1226766 (+) | 2076 | WP_001557331.1 | type I DNA topoisomerase | - |
| SAA6159_RS05820 (SAA6159_01106) | trmFO | 1226922..1228229 (+) | 1308 | WP_000195259.1 | methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO | - |
| SAA6159_RS05825 (SAA6159_01107) | xerC | 1228646..1229542 (+) | 897 | WP_001015608.1 | tyrosine recombinase XerC | - |
| SAA6159_RS05830 (SAA6159_01108) | hslV | 1229539..1230084 (+) | 546 | WP_000072681.1 | ATP-dependent protease subunit HslV | - |
| SAA6159_RS05835 (SAA6159_01109) | hslU | 1230150..1231553 (+) | 1404 | WP_000379054.1 | ATP-dependent protease ATPase subunit HslU | - |
| SAA6159_RS05840 (SAA6159_01110) | codY | 1231578..1232351 (+) | 774 | WP_000055340.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| SAA6159_RS05845 (SAA6159_03030) | - | 1232425..1232499 (+) | 75 | WP_044026084.1 | hypothetical protein | - |
| SAA6159_RS05850 (SAA6159_01111) | rpsB | 1232698..1233465 (+) | 768 | WP_000268484.1 | 30S ribosomal protein S2 | - |
| SAA6159_RS05855 (SAA6159_03035) | - | 1233499..1233612 (+) | 114 | WP_001789890.1 | hypothetical protein | - |
| SAA6159_RS05860 (SAA6159_01112) | tsf | 1233647..1234528 (+) | 882 | WP_000201387.1 | translation elongation factor Ts | - |
| SAA6159_RS05865 (SAA6159_01113) | pyrH | 1234665..1235387 (+) | 723 | WP_000057330.1 | UMP kinase | - |
| SAA6159_RS05870 (SAA6159_01114) | frr | 1235406..1235960 (+) | 555 | WP_001280006.1 | ribosome recycling factor | - |
| SAA6159_RS05875 (SAA6159_01115) | - | 1236333..1237103 (+) | 771 | WP_000473705.1 | isoprenyl transferase | - |
| SAA6159_RS05880 (SAA6159_01116) | - | 1237110..1237892 (+) | 783 | WP_000868413.1 | phosphatidate cytidylyltransferase | - |
| SAA6159_RS05885 (SAA6159_01117) | rseP | 1238104..1239390 (+) | 1287 | WP_000121122.1 | RIP metalloprotease RseP | - |
| SAA6159_RS05890 (SAA6159_01118) | - | 1239410..1241113 (+) | 1704 | WP_000814101.1 | proline--tRNA ligase | - |
| SAA6159_RS05895 (SAA6159_01119) | - | 1241377..1245687 (+) | 4311 | WP_014532616.1 | PolC-type DNA polymerase III | - |
| SAA6159_RS05900 (SAA6159_01120) | rimP | 1245977..1246444 (+) | 468 | WP_000036631.1 | ribosome maturation factor RimP | - |
| SAA6159_RS05905 (SAA6159_01121) | nusA | 1246465..1247640 (+) | 1176 | WP_000097463.1 | transcription termination factor NusA | - |
| SAA6159_RS05910 (SAA6159_01122) | rnpM | 1247661..1247945 (+) | 285 | WP_000727423.1 | RNase P modulator RnpM | - |
| SAA6159_RS05915 (SAA6159_01123) | - | 1247942..1248259 (+) | 318 | WP_000020853.1 | YlxQ family RNA-binding protein | - |
| SAA6159_RS05920 (SAA6159_01124) | infB | 1248264..1250372 (+) | 2109 | WP_000043646.1 | translation initiation factor IF-2 | - |
| SAA6159_RS05925 (SAA6159_01125) | rbfA | 1250758..1251108 (+) | 351 | WP_000097322.1 | 30S ribosome-binding factor RbfA | - |
| SAA6159_RS05930 (SAA6159_01126) | truB | 1251278..1252195 (+) | 918 | WP_000282295.1 | tRNA pseudouridine(55) synthase TruB | - |
| SAA6159_RS05935 (SAA6159_01127) | ribF | 1252210..1253181 (+) | 972 | WP_000864185.1 | riboflavin biosynthesis protein RibF | - |
| SAA6159_RS05940 (SAA6159_01128) | rpsO | 1253296..1253565 (+) | 270 | WP_001018328.1 | 30S ribosomal protein S15 | - |
| SAA6159_RS05945 (SAA6159_01129) | pnp | 1253935..1256031 (+) | 2097 | WP_000076689.1 | polyribonucleotide nucleotidyltransferase | - |
| SAA6159_RS05950 (SAA6159_01130) | rnjB | 1256267..1257940 (+) | 1674 | WP_000052590.1 | ribonuclease J2 | - |
| SAA6159_RS05955 (SAA6159_01131) | - | 1258197..1260566 (+) | 2370 | WP_000035764.1 | DNA translocase FtsK | - |
| SAA6159_RS05960 (SAA6159_01132) | - | 1260571..1261284 (+) | 714 | WP_001293306.1 | GntR family transcriptional regulator | - |
| SAA6159_RS05965 (SAA6159_01133) | yfmF | 1261315..1262580 (+) | 1266 | WP_000089945.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| SAA6159_RS05970 (SAA6159_01134) | yfmH | 1262580..1263866 (+) | 1287 | WP_000664769.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| SAA6159_RS05975 (SAA6159_01135) | ymfI | 1263866..1264570 (+) | 705 | WP_000646230.1 | elongation factor P 5-aminopentanone reductase | - |
| SAA6159_RS05980 (SAA6159_01136) | - | 1264675..1265502 (+) | 828 | WP_000214890.1 | YmfK family protein | - |
| SAA6159_RS05985 (SAA6159_01137) | - | 1265521..1265913 (+) | 393 | WP_000859443.1 | RodZ family helix-turn-helix domain-containing protein | - |
| SAA6159_RS05990 (SAA6159_01138) | pgsA | 1265947..1266525 (+) | 579 | WP_001025093.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| SAA6159_RS05995 (SAA6159_01139) | - | 1266898..1268049 (+) | 1152 | WP_000020359.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| SAA6159_RS06000 (SAA6159_01140) | recA | 1268214..1269257 (+) | 1044 | WP_000368164.1 | recombinase RecA | Machinery gene |
| SAA6159_RS06005 (SAA6159_01141) | rny | 1269611..1271170 (+) | 1560 | WP_001050913.1 | ribonuclease Y | - |
| SAA6159_RS06010 (SAA6159_01142) | - | 1271468..1271683 (-) | 216 | WP_000026308.1 | hypothetical protein | - |
| SAA6159_RS06015 (SAA6159_01143) | - | 1271857..1272654 (+) | 798 | WP_001222105.1 | TIGR00282 family metallophosphoesterase | - |
Sequence
Protein
Download Length: 347 a.a. Molecular weight: 37690.54 Da Isoelectric Point: 4.8509
>NTDB_id=46335 SAA6159_RS06000 WP_000368164.1 1268214..1269257(+) (recA) [Staphylococcus aureus subsp. aureus JKD6159]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNIGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQSNGGVAAFIDAEHALDPEYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKMYLKENPQFKEEIDR
KLREKLGISDGDVEETEDAPKSLFDEE
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNIGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQSNGGVAAFIDAEHALDPEYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKMYLKENPQFKEEIDR
KLREKLGISDGDVEETEDAPKSLFDEE
Nucleotide
Download Length: 1044 bp
>NTDB_id=46335 SAA6159_RS06000 WP_000368164.1 1268214..1269257(+) (recA) [Staphylococcus aureus subsp. aureus JKD6159]
TTGGATAACGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAGAAATCTTTCGGTAAAGGTGCCGTAATGAA
GTTAGGTGACAATATAGGTCGCCGAGTTTCAACTACATCAACTGGTTCAGTTACATTAGATAATGCGCTAGGTGTAGGTG
GCTATCCTAAAGGACGAATTATTGAAATTTATGGTCCTGAAAGTTCTGGTAAGACAACAGTAGCGCTTCACGCTATTGCT
GAAGTACAAAGTAATGGCGGGGTGGCAGCATTTATCGATGCTGAACATGCTTTAGATCCAGAATATGCTCAAGCATTAGG
CGTAGATATCGATAATTTATATTTATCGCAACCGGATCATGGTGAACAAGGTCTTGAAATCGCCGAAGCATTTGTTAGAA
GTGGTGCAGTTGATATTGTAGTTGTAGACTCAGTTGCTGCTTTAACACCTAAAGCTGAAATTGAAGGAGAAATGGGAGAC
ACTCACGTTGGTTTACAAGCTCGTTTAATGTCACAAGCGTTACGTAAACTTTCAGGTGCTATTTCTAAATCAAATACAAC
TGCTATTTTCATCAACCAAATTCGTGAAAAAGTTGGTGTTATGTTCGGTAATCCAGAGACTACACCAGGTGGACGTGCTT
TAAAATTCTATAGTTCAGTAAGACTAGAAGTACGTCGTGCAGAACAGCTTAAACAAGGACAAGAAATTGTAGGTAATAGA
ACTAAAATTAAAGTCGTTAAAAATAAAGTGGCACCACCATTTAGAGTAGCTGAAGTTGATATTATGTATGGACAAGGTAT
TTCTAAAGAGGGTGAACTTATTGATTTAGGTGTTGAAAACGACATCGTTGATAAATCAGGAGCATGGTATTCTTACAATG
GCGAACGAATGGGTCAAGGTAAGGAAAATGTTAAAATGTACTTGAAAGAAAACCCACAATTTAAAGAAGAAATTGATCGT
AAATTGAGAGAAAAATTAGGTATATCTGATGGTGATGTTGAAGAAACAGAAGATGCACCAAAGTCATTATTTGACGAAGA
ATAG
TTGGATAACGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAGAAATCTTTCGGTAAAGGTGCCGTAATGAA
GTTAGGTGACAATATAGGTCGCCGAGTTTCAACTACATCAACTGGTTCAGTTACATTAGATAATGCGCTAGGTGTAGGTG
GCTATCCTAAAGGACGAATTATTGAAATTTATGGTCCTGAAAGTTCTGGTAAGACAACAGTAGCGCTTCACGCTATTGCT
GAAGTACAAAGTAATGGCGGGGTGGCAGCATTTATCGATGCTGAACATGCTTTAGATCCAGAATATGCTCAAGCATTAGG
CGTAGATATCGATAATTTATATTTATCGCAACCGGATCATGGTGAACAAGGTCTTGAAATCGCCGAAGCATTTGTTAGAA
GTGGTGCAGTTGATATTGTAGTTGTAGACTCAGTTGCTGCTTTAACACCTAAAGCTGAAATTGAAGGAGAAATGGGAGAC
ACTCACGTTGGTTTACAAGCTCGTTTAATGTCACAAGCGTTACGTAAACTTTCAGGTGCTATTTCTAAATCAAATACAAC
TGCTATTTTCATCAACCAAATTCGTGAAAAAGTTGGTGTTATGTTCGGTAATCCAGAGACTACACCAGGTGGACGTGCTT
TAAAATTCTATAGTTCAGTAAGACTAGAAGTACGTCGTGCAGAACAGCTTAAACAAGGACAAGAAATTGTAGGTAATAGA
ACTAAAATTAAAGTCGTTAAAAATAAAGTGGCACCACCATTTAGAGTAGCTGAAGTTGATATTATGTATGGACAAGGTAT
TTCTAAAGAGGGTGAACTTATTGATTTAGGTGTTGAAAACGACATCGTTGATAAATCAGGAGCATGGTATTCTTACAATG
GCGAACGAATGGGTCAAGGTAAGGAAAATGTTAAAATGTACTTGAAAGAAAACCCACAATTTAAAGAAGAAATTGATCGT
AAATTGAGAGAAAAATTAGGTATATCTGATGGTGATGTTGAAGAAACAGAAGATGCACCAAAGTCATTATTTGACGAAGA
ATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.