Detailed information
Bioinformatically predicted
Overview
| Name | ruvA | Type | Machinery gene |
| Locus tag | HPOK113_RS04530 | Genome accession | NC_020508 |
| Coordinates | 942247..942798 (-) | Length | 183 a.a. |
| NCBI ID | WP_015427980.1 | Uniprot ID | - |
| Organism | Helicobacter pylori OK113 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 937247..947798
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPOK113_RS04515 (HPOK113_0887) | - | 937816..938547 (+) | 732 | WP_015427977.1 | NYN domain-containing protein | - |
| HPOK113_RS08940 | - | 939058..939390 (-) | 333 | WP_080105199.1 | DUF3519 domain-containing protein | - |
| HPOK113_RS04525 (HPOK113_0889) | - | 939418..942048 (-) | 2631 | WP_015427979.1 | DUF3519 domain-containing protein | - |
| HPOK113_RS04530 (HPOK113_0890) | ruvA | 942247..942798 (-) | 552 | WP_015427980.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| HPOK113_RS04535 (HPOK113_0891) | - | 942823..944667 (-) | 1845 | WP_015427981.1 | FapA family protein | - |
| HPOK113_RS04540 (HPOK113_0892) | murJ | 944760..946220 (+) | 1461 | WP_015427982.1 | murein biosynthesis integral membrane protein MurJ | - |
| HPOK113_RS04545 (HPOK113_0893) | cysS | 946221..947618 (+) | 1398 | WP_015427983.1 | cysteine--tRNA ligase | - |
Sequence
Protein
Download Length: 183 a.a. Molecular weight: 20136.68 Da Isoelectric Point: 8.4855
>NTDB_id=46333 HPOK113_RS04530 WP_015427980.1 942247..942798(-) (ruvA) [Helicobacter pylori OK113]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPAHNEVFLALESLGFKSAEINKV
LKTLKPNLSTETAIKEALQQLRS
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPAHNEVFLALESLGFKSAEINKV
LKTLKPNLSTETAIKEALQQLRS
Nucleotide
Download Length: 552 bp
>NTDB_id=46333 HPOK113_RS04530 WP_015427980.1 942247..942798(-) (ruvA) [Helicobacter pylori OK113]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGAGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGTATAGGCAAAAAGCTTGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAACTAGCCCTGCGCACAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCTTAAAACCCAATCTCAGCACCGAAACAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGAGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGTATAGGCAAAAAGCTTGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAACTAGCCCTGCGCACAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCTTAAAACCCAATCTCAGCACCGAAACAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvA | Helicobacter pylori 26695 |
93.989 |
100 |
0.94 |
| ruvA | Bacillus subtilis subsp. subtilis str. 168 |
32.836 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae TIGR4 |
33.846 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae R6 |
33.846 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae D39 |
33.846 |
100 |
0.361 |