Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HW271_RS00610 Genome accession   NZ_CP058258
Coordinates   126040..127188 (+) Length   382 a.a.
NCBI ID   WP_178894464.1    Uniprot ID   -
Organism   Streptococcus sp. oral taxon 061 strain F0704     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 121040..132188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW271_RS00585 (HW271_00585) - 121134..122555 (+) 1422 WP_178894459.1 NCS2 family permease -
  HW271_RS00590 (HW271_00590) tsaE 122644..123087 (+) 444 WP_178894460.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  HW271_RS00595 (HW271_00595) - 123077..123598 (+) 522 WP_178894461.1 GNAT family N-acetyltransferase -
  HW271_RS00600 (HW271_00600) brpA 123603..124652 (+) 1050 WP_254730020.1 biofilm formation/cell division transcriptional regulator BrpA -
  HW271_RS00605 (HW271_00605) cinA 124729..125985 (+) 1257 WP_178894463.1 competence/damage-inducible protein A Machinery gene
  HW271_RS00610 (HW271_00610) recA 126040..127188 (+) 1149 WP_178894464.1 recombinase RecA Machinery gene
  HW271_RS00615 (HW271_00615) - 127234..127788 (-) 555 WP_178894465.1 GNAT family N-acetyltransferase -
  HW271_RS00620 (HW271_00620) - 127897..129267 (+) 1371 WP_178894466.1 MATE family efflux transporter -
  HW271_RS00625 (HW271_00625) - 129364..130080 (+) 717 WP_006146163.1 YebC/PmpR family DNA-binding transcriptional regulator -
  HW271_RS00630 (HW271_00630) - 130126..130809 (-) 684 WP_178894467.1 hypothetical protein -
  HW271_RS00635 (HW271_00635) - 131018..131479 (+) 462 WP_004250536.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 40882.49 Da        Isoelectric Point: 4.9619

>NTDB_id=463200 HW271_RS00610 WP_178894464.1 126040..127188(+) (recA) [Streptococcus sp. oral taxon 061 strain F0704]
MAKKPTKKLDEIGKKFGADREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVR
GSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEALVEIMYGEGISRTGELLKIASDLDIIQKAGAWYSYKGEKIGQGS
ENAKKYLADHPEIFDEIDHQVRVQYGLIEEEEGSKASSAAETSSNQEVTLDLGDALEIEIEE

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=463200 HW271_RS00610 WP_178894464.1 126040..127188(+) (recA) [Streptococcus sp. oral taxon 061 strain F0704]
ATGGCGAAAAAACCAACAAAAAAATTAGATGAAATTGGGAAAAAATTTGGAGCTGATCGTGAAAAAGCTTTGAATGATGC
GCTTAAATTGATTGAAAAAGACTTCGGTAAGGGTTCAATCATGCGCTTGGGTGAACGCGCAGAGCAAAAAGTGCAAGTGA
TGAGTTCAGGTTCATTGGCACTTGATATTGCACTTGGTTCAGGTGGTTATCCAAAGGGACGTATCATTGAAATCTACGGT
CCAGAATCATCAGGTAAGACAACAGTAGCCCTTCACGCTGTAGCACAAGCACAAAAAGAAGGCGGAATTGCAGCCTTTAT
CGATGCGGAACACGCGCTTGATCCAGCCTATGCAGCAGCTCTTGGTGTTAACATTGATGAATTGCTCTTGTCACAACCAG
ACTCAGGTGAGCAAGGTCTTGAAATTGCAGGAAAATTGATTGATTCAGGTGCGGTTGACCTTGTGGTTATCGACTCTGTT
GCAGCTCTTGTACCTCGTGCAGAAATCGATGGAGATATCGGAGATAGCCACGTTGGTCTTCAAGCTCGTATGATGAGTCA
GGCTATGCGTAAGCTCGGAGCTTCTATCAATAAAACAAAGACAATTGCTATTTTCATCAACCAATTGCGTGAAAAAGTAG
GGGTTATGTTTGGTAATCCAGAAACAACTCCTGGTGGACGTGCCCTTAAATTCTATGCTTCTGTCCGTTTGGATGTTCGT
GGAAGCACACAAATCAAGGGAACTGGTGACCAAAAAGACACTAACGTCGGTAAAGAAACTAAGATTAAAGTTGTGAAAAA
CAAGGTTGCTCCACCGTTCAAAGAAGCTCTTGTTGAAATCATGTACGGAGAAGGTATTTCTAGAACTGGTGAACTCTTGA
AGATTGCTAGTGATTTGGATATCATTCAAAAAGCAGGTGCTTGGTACTCATACAAGGGTGAAAAAATTGGACAAGGATCT
GAGAATGCGAAGAAATACTTGGCAGATCATCCAGAAATCTTTGATGAGATTGACCACCAAGTTCGTGTACAATATGGTTT
GATTGAAGAGGAAGAAGGCTCTAAAGCAAGTTCAGCAGCAGAAACAAGTTCTAACCAAGAAGTGACTCTTGATTTAGGCG
ATGCTCTTGAAATCGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

93.766

100

0.945
  recA Streptococcus mitis SK321

92.987

100

0.937
  recA Streptococcus pneumoniae R6

90.488

100

0.921
  recA Streptococcus pneumoniae TIGR4

90.488

100

0.921
  recA Streptococcus pneumoniae D39

90.488

100

0.921
  recA Streptococcus pneumoniae Rx1

90.488

100

0.921
  recA Streptococcus pyogenes NZ131

86.016

99.215

0.853
  recA Streptococcus mutans UA159

84.595

100

0.848
  recA Lactococcus lactis subsp. cremoris KW2

78.187

92.408

0.723
  recA Latilactobacillus sakei subsp. sakei 23K

69.909

86.126

0.602
  recA Bacillus subtilis subsp. subtilis str. 168

68.788

86.387

0.594
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.158

84.555

0.534
  recA Neisseria gonorrhoeae MS11

61.212

86.387

0.529
  recA Neisseria gonorrhoeae MS11

61.212

86.387

0.529
  recA Neisseria gonorrhoeae strain FA1090

61.212

86.387

0.529
  recA Acinetobacter baumannii D1279779

61.963

85.34

0.529
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.585

85.864

0.529
  recA Vibrio cholerae strain A1552

62.037

84.817

0.526
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.037

84.817

0.526
  recA Glaesserella parasuis strain SC1401

62.229

84.555

0.526
  recA Acinetobacter baylyi ADP1

61.35

85.34

0.524
  recA Pseudomonas stutzeri DSM 10701

56.286

91.623

0.516
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.182

86.387

0.503
  recA Ralstonia pseudosolanacearum GMI1000

60.252

82.984

0.5
  recA Helicobacter pylori strain NCTC11637

57.057

87.173

0.497
  recA Helicobacter pylori 26695

57.057

87.173

0.497