Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HUW50_RS20160 Genome accession   NZ_CP055263
Coordinates   4382113..4383153 (+) Length   346 a.a.
NCBI ID   WP_066337578.1    Uniprot ID   A0A179SSH5
Organism   Metabacillus sp. KUDC1714     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4377113..4388153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW50_RS20135 (HUW50_20135) - 4377544..4377801 (+) 258 WP_066337593.1 DUF3243 domain-containing protein -
  HUW50_RS20140 (HUW50_20140) - 4377998..4378789 (+) 792 WP_066337586.1 DUF3388 domain-containing protein -
  HUW50_RS20145 (HUW50_20145) - 4378806..4379678 (+) 873 WP_066337583.1 RodZ domain-containing protein -
  HUW50_RS20150 (HUW50_20150) pgsA 4379967..4380545 (+) 579 WP_066337582.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HUW50_RS20155 (HUW50_20155) cinA 4380575..4381825 (+) 1251 WP_311773993.1 competence/damage-inducible protein A Machinery gene
  HUW50_RS20160 (HUW50_20160) recA 4382113..4383153 (+) 1041 WP_066337578.1 recombinase RecA Machinery gene
  HUW50_RS20165 (HUW50_20165) rny 4383767..4385329 (+) 1563 WP_066337576.1 ribonuclease Y -
  HUW50_RS20170 (HUW50_20170) - 4385451..4386245 (+) 795 WP_066337572.1 TIGR00282 family metallophosphoesterase -
  HUW50_RS20175 (HUW50_20175) spoVS 4386618..4386878 (+) 261 WP_066231967.1 stage V sporulation protein SpoVS -
  HUW50_RS20180 (HUW50_20180) - 4386987..4387910 (+) 924 WP_066337567.1 dipeptidase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37695.97 Da        Isoelectric Point: 4.8438

>NTDB_id=457322 HUW50_RS20160 WP_066337578.1 4382113..4383153(+) (recA) [Metabacillus sp. KUDC1714]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDRKILTSPSGSLALDAALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDILVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNKT
KIKIVKNKVAPPFKVAEVDIMYGEGISKEGEIIDLGSDIDIVQKSGSWYSYNEERLGQGRENAKQFLKENPALRLEIQEK
IRKHYGLDEDVIAPDESQEELDLLED

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=457322 HUW50_RS20160 WP_066337578.1 4382113..4383153(+) (recA) [Metabacillus sp. KUDC1714]
GTGAGCGATCGTCAAGCTGCCTTAGATATGGCGTTAAAACAAATAGAGAAGCAATTCGGTAAAGGTTCCATTATGAAATT
AGGGGAACAAACAGATAGAAAGATTTTAACATCTCCAAGTGGTTCACTAGCTCTTGATGCGGCATTAGGAGTAGGTGGAT
ATCCTCGTGGTAGAATTATAGAGATATACGGTCCTGAAAGCTCTGGTAAAACGACTGTAGCGCTTCATGCTATTGCTGAA
GTACAGCAACAAGGTGGACAAGCAGCATTTATCGATGCAGAGCACGCACTTGATCCTGTCTATGCACAAAAGCTAGGTGT
TAATATAGATGAACTATTATTATCTCAACCTGACACAGGAGAGCAGGCACTTGAAATTGCTGAAGCGCTTGTTCGAAGTG
GCGCTATTGATATACTAGTTATTGACTCAGTTGCTGCATTAGTGCCTAAAGCTGAAATTGAAGGTGAGATGGGTGATTCA
CACGTTGGTCTTCAAGCACGTTTAATGTCACAAGCATTACGAAAACTGTCAGGTGCTATTAATAAATCAAAAACAATCGC
GATTTTTATAAACCAAATTCGCGAAAAAATTGGTGTTATGTTTGGTAATCCAGAAACAACACCAGGCGGACGTGCTTTAA
AATTCTATTCATCAGTTCGTCTAGAGGTTCGTCGCGCAGAAACACTTAAACAAGGAAACGATATGGTCGGAAACAAGACG
AAAATCAAAATTGTGAAAAACAAAGTTGCTCCACCATTCAAAGTGGCTGAAGTGGACATCATGTACGGTGAAGGGATCTC
TAAAGAGGGAGAAATTATCGATTTAGGATCTGATATTGATATTGTTCAAAAAAGTGGTTCTTGGTATTCATATAATGAAG
AGCGTTTAGGACAAGGTCGTGAAAATGCGAAGCAATTCCTAAAAGAAAACCCAGCTCTTCGTTTAGAAATTCAAGAAAAA
ATCCGTAAGCATTATGGATTGGATGAAGATGTCATTGCTCCGGATGAGAGTCAAGAGGAATTAGATTTATTAGAGGATTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A179SSH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

90

95.376

0.858
  recA Latilactobacillus sakei subsp. sakei 23K

72.414

100

0.728
  recA Streptococcus mutans UA159

66.764

99.133

0.662
  recA Streptococcus mitis NCTC 12261

68.485

95.376

0.653
  recA Streptococcus mitis SK321

68.485

95.376

0.653
  recA Streptococcus pneumoniae R6

68.485

95.376

0.653
  recA Streptococcus pneumoniae TIGR4

68.485

95.376

0.653
  recA Streptococcus pneumoniae Rx1

68.485

95.376

0.653
  recA Streptococcus pneumoniae D39

68.485

95.376

0.653
  recA Streptococcus pyogenes NZ131

68.902

94.798

0.653
  recA Lactococcus lactis subsp. cremoris KW2

66.066

96.243

0.636
  recA Neisseria gonorrhoeae strain FA1090

63.636

98.555

0.627
  recA Neisseria gonorrhoeae MS11

63.636

98.555

0.627
  recA Neisseria gonorrhoeae MS11

63.636

98.555

0.627
  recA Helicobacter pylori strain NCTC11637

62.865

98.844

0.621
  recA Helicobacter pylori 26695

62.865

98.844

0.621
  recA Acinetobacter baumannii D1279779

61.159

99.711

0.61
  recA Ralstonia pseudosolanacearum GMI1000

67.093

90.462

0.607
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.13

97.688

0.607
  recA Acinetobacter baylyi ADP1

60.58

99.711

0.604
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

94.509

0.604
  recA Vibrio cholerae strain A1552

64.798

92.775

0.601
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.798

92.775

0.601
  recA Glaesserella parasuis strain SC1401

58.841

99.711

0.587
  recA Pseudomonas stutzeri DSM 10701

62.5

92.486

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.5

92.486

0.578