Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   HUW50_RS20155 Genome accession   NZ_CP055263
Coordinates   4380575..4381825 (+) Length   416 a.a.
NCBI ID   WP_311773993.1    Uniprot ID   -
Organism   Metabacillus sp. KUDC1714     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 4375575..4386825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW50_RS20130 (HUW50_20130) ymfI 4376653..4377375 (+) 723 WP_185653153.1 elongation factor P 5-aminopentanone reductase -
  HUW50_RS20135 (HUW50_20135) - 4377544..4377801 (+) 258 WP_066337593.1 DUF3243 domain-containing protein -
  HUW50_RS20140 (HUW50_20140) - 4377998..4378789 (+) 792 WP_066337586.1 DUF3388 domain-containing protein -
  HUW50_RS20145 (HUW50_20145) - 4378806..4379678 (+) 873 WP_066337583.1 RodZ domain-containing protein -
  HUW50_RS20150 (HUW50_20150) pgsA 4379967..4380545 (+) 579 WP_066337582.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HUW50_RS20155 (HUW50_20155) cinA 4380575..4381825 (+) 1251 WP_311773993.1 competence/damage-inducible protein A Machinery gene
  HUW50_RS20160 (HUW50_20160) recA 4382113..4383153 (+) 1041 WP_066337578.1 recombinase RecA Machinery gene
  HUW50_RS20165 (HUW50_20165) rny 4383767..4385329 (+) 1563 WP_066337576.1 ribonuclease Y -
  HUW50_RS20170 (HUW50_20170) - 4385451..4386245 (+) 795 WP_066337572.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 46312.87 Da        Isoelectric Point: 4.8798

>NTDB_id=457321 HUW50_RS20155 WP_311773993.1 4380575..4381825(+) (cinA) [Metabacillus sp. KUDC1714]
MNIRTEIIAVGSELLLGQIVNSNAQFLSKELAELGMNVYYHTVVGDNPTRLEQAIKIAKERSNIIIFTGGLGPTKDDLTK
ETISKSLGKELIFDQAALESIEQYFVQTKRIMSENNKKQALVLDGSYILKNDYGMAPGMALEVDHTIYMLLPGPPSEMKP
MFQNYGREYFQNQLGFQEKIISRVLRFFGIGESQLETDIQDIIDEQINPTVAPLASEGEVTLRLTAKHVDEEVANQLLNE
LEQKIHARVGEYLYGYEQTTLAQELKTLLIDKQKTISAAESLTGGMFSEQLTALEGSSQFLKGSIISYSNEMKAQILNVS
KQTLDEYGAVSEQCAKEMAEQVRKISNSDIGISFTGVAGPEPHEGQPVGTVFIGISMKDSETKIYPFHFAGSRKGIRVRT
VKYGCHYLVKLLSEIE

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=457321 HUW50_RS20155 WP_311773993.1 4380575..4381825(+) (cinA) [Metabacillus sp. KUDC1714]
ATGAATATACGTACAGAAATAATTGCTGTTGGCTCTGAATTACTGCTTGGGCAAATTGTAAACAGCAATGCTCAATTTTT
ATCTAAAGAACTTGCTGAACTTGGGATGAATGTTTATTATCATACTGTAGTTGGTGACAATCCTACCCGACTTGAGCAAG
CAATTAAAATTGCTAAGGAACGATCAAACATTATTATTTTCACTGGAGGGCTTGGACCTACAAAGGATGATTTAACGAAA
GAAACCATCTCTAAATCACTTGGTAAGGAACTTATATTTGATCAGGCTGCGTTAGAAAGCATTGAACAATACTTTGTTCA
AACTAAACGAATCATGTCTGAAAATAATAAAAAGCAAGCACTTGTACTAGATGGCTCATACATATTGAAGAATGATTATG
GGATGGCACCTGGGATGGCTTTAGAAGTTGATCATACTATCTATATGCTTTTACCTGGTCCTCCGAGTGAAATGAAACCA
ATGTTCCAAAACTATGGTCGAGAATATTTTCAAAATCAACTTGGTTTTCAGGAAAAGATTATTTCTCGTGTGTTAAGATT
CTTTGGTATAGGTGAATCCCAGCTTGAGACAGACATACAAGACATCATTGATGAACAGATAAACCCAACCGTTGCCCCCT
TAGCATCTGAAGGTGAAGTAACGTTACGATTAACCGCAAAGCATGTAGACGAAGAAGTTGCGAATCAACTATTAAACGAA
CTTGAACAAAAAATTCATGCACGTGTTGGAGAATATTTATACGGTTATGAACAAACAACACTTGCTCAAGAACTTAAAAC
ACTGTTAATAGATAAACAGAAAACAATATCTGCAGCAGAAAGTTTAACAGGTGGAATGTTTTCTGAACAACTAACAGCCT
TAGAGGGTTCATCACAATTTTTAAAAGGTAGTATTATTAGCTATTCAAATGAGATGAAGGCACAAATACTAAATGTATCA
AAGCAAACACTTGATGAATATGGGGCTGTCAGTGAGCAATGTGCAAAGGAAATGGCAGAGCAAGTACGCAAGATATCAAA
TAGTGATATCGGTATTAGCTTTACAGGTGTTGCAGGTCCAGAACCACATGAGGGACAACCTGTAGGTACAGTATTTATCG
GTATTTCTATGAAGGATAGTGAAACAAAAATTTATCCGTTTCATTTTGCAGGTTCAAGAAAAGGAATTCGTGTGAGAACG
GTAAAGTATGGATGTCATTATTTAGTAAAACTTTTATCGGAAATAGAATGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(7-167)

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Competence-damaged protein (CinA)

(259-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60.341

98.798

0.596
  cinA Streptococcus pneumoniae TIGR4

47.381

100

0.478
  cinA Streptococcus mitis SK321

47.381

100

0.478
  cinA Streptococcus mitis NCTC 12261

46.905

100

0.474
  cinA Streptococcus pneumoniae Rx1

46.905

100

0.474
  cinA Streptococcus pneumoniae R6

46.905

100

0.474
  cinA Streptococcus pneumoniae D39

46.667

100

0.471
  cinA Streptococcus mutans UA159

47.87

95.913

0.459
  cinA Streptococcus suis isolate S10

39.698

95.673

0.38